Variant report

Variant	rs11611351
Chromosome Location	chr12:119505249-119505250
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11611295	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11614579	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030825	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34242467	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34264468	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34498019	0.80[EUR][1000 genomes]
rs34504443	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35090273	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35233512	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61937986	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119475200-119505800	Weak transcription	Fetal Brain Female	brain
2	chr12:119499400-119506800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:119504000-119505800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:119505000-119505800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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