Variant report

Variant	rs11614579
Chromosome Location	chr12:119519324-119519325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11611295	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11611351	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030825	0.82[CEU][hapmap]
rs34242467	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34264468	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61937986	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119510000-119519800	Weak transcription	Fetal Brain Female	brain
2	chr12:119513800-119519800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:119513800-119523400	Weak transcription	Pancreas	Pancrea
4	chr12:119517600-119519400	Weak transcription	Brain Germinal Matrix	brain
5	chr12:119518200-119519600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:119518400-119519400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr12:119518600-119520600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:119518800-119519400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:119518800-119520000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:119518800-119520200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:119518800-119520400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:119519000-119519400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr12:119519000-119519400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr12:119519000-119519400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:119519200-119519400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:119519200-119519800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr12:119519200-119521000	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links