Variant report

Variant	rs61937986
Chromosome Location	chr12:119515299-119515300
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11611295	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11611351	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614579	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030825	0.80[AMR][1000 genomes]
rs34242467	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34264468	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3327170	chr12:119511269-119515867	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119510000-119519800	Weak transcription	Fetal Brain Female	brain
2	chr12:119513800-119519200	Weak transcription	Fetal Brain Male	brain
3	chr12:119513800-119519800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:119513800-119523400	Weak transcription	Pancreas	Pancrea
5	chr12:119514000-119518400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:119515000-119515800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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