Variant report

Variant	rs11612098
Chromosome Location	chr12:9058274-9058275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000824	0.92[ASN][1000 genomes]
rs10771185	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11611936	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1805743	0.98[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1805744	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2159963	0.92[ASN][1000 genomes]
rs6487463	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7295943	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7297711	0.84[ASN][1000 genomes]
rs7302969	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7306169	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7959846	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1409240	chr12:9058267-9058284	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11612098	M6PR	cis	lung	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:9056400-9058400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:9056600-9059200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:9056600-9059400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:9056800-9059000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:9057200-9060200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:9057600-9058400	Enhancers	Fetal Heart	heart
10	chr12:9057600-9058800	Enhancers	Rectal Smooth Muscle	rectum
11	chr12:9057800-9058800	Enhancers	Fetal Muscle Leg	muscle
12	chr12:9058200-9058400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:9058200-9058600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr12:9058200-9058600	Active TSS	Stomach Smooth Muscle	stomach
15	chr12:9058200-9058800	Enhancers	Placenta	Placenta
16	chr12:9058200-9059600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr12:9058200-9060600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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