Variant report

Variant	rs7295943
Chromosome Location	chr12:9054671-9054672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000824	0.89[ASN][1000 genomes]
rs10771185	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611936	0.82[ASN][1000 genomes]
rs11612098	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1805743	0.89[ASN][1000 genomes]
rs1805744	0.89[ASN][1000 genomes]
rs2159963	0.89[ASN][1000 genomes]
rs6487463	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297711	0.81[ASN][1000 genomes]
rs7302969	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7306169	0.95[ASN][1000 genomes]
rs7959846	0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7295943	M6PR	cis	lung	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9052400-9057000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:9054600-9055000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr12:9054600-9057200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links