Variant report

Variant	rs10771185
Chromosome Location	chr12:9056410-9056411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000824	0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs11611936	0.82[ASN][1000 genomes]
rs11612098	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805742	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1805743	0.89[ASN][1000 genomes]
rs1805744	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2159963	0.90[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs4883201	0.80[CHD][hapmap]
rs6487463	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7295943	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297711	0.81[ASN][1000 genomes]
rs7302969	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7306169	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7959846	0.95[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10771185	KLRB1	cis	cerebellum	SCAN
rs10771185	CLEC9A	cis	cerebellum	SCAN
rs10771185	PRB4	cis	cerebellum	SCAN
rs10771185	M6PR	cis	lung	GTEx
rs10771185	CD163	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9052400-9057000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:9054600-9057200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9054800-9058200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:9055000-9058000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:9055200-9058200	Enhancers	Primary B cells from cord blood	blood
8	chr12:9056000-9057200	Enhancers	Fetal Heart	heart
9	chr12:9056200-9060400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:9056400-9056600	Enhancers	Left Ventricle	heart
11	chr12:9056400-9056800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr12:9056400-9058400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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