Variant report

Variant	rs6487463
Chromosome Location	chr12:9055671-9055672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1000824	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs10771185	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611936	0.82[ASN][1000 genomes]
rs11612098	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805742	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1805743	0.89[ASN][1000 genomes]
rs1805744	0.88[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2159963	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs7295943	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297711	0.81[ASN][1000 genomes]
rs7302969	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7306169	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7959846	0.95[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9050800-9065600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:9052400-9057000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:9054600-9057200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9054800-9056400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:9054800-9058200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:9055000-9058000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:9055000-9060400	Enhancers	Primary B cells from peripheral blood	blood
8	chr12:9055200-9055800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:9055200-9056200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:9055200-9058200	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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