Variant report

Variant	rs1805742
Chromosome Location	chr12:9065846-9065847
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10771185	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11611936	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11612098	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1805743	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1805744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2159963	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4883201	0.90[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6487463	0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7295943	0.90[ASN][1000 genomes]
rs7297711	0.89[ASN][1000 genomes]
rs7302969	0.92[ASN][1000 genomes]
rs7306169	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7959846	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1805742	M6PR	cis	lung	GTEx

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9060400-9066000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:9062600-9066000	Weak transcription	Right Ventricle	heart
3	chr12:9063600-9066400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr12:9063800-9069600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr12:9064600-9066000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:9064600-9066000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:9064600-9066000	Enhancers	HMEC	breast
8	chr12:9064600-9070200	Active TSS	H1 Cell Line	embryonic stem cell
9	chr12:9064800-9066000	Weak transcription	Primary B cells from peripheral blood	blood
10	chr12:9064800-9066000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:9064800-9066200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr12:9064800-9066200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr12:9064800-9066200	Weak transcription	Thymus	Thymus
14	chr12:9064800-9069400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr12:9064800-9069600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr12:9065000-9066000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:9065000-9066400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr12:9065200-9066000	Enhancers	Brain Angular Gyrus	brain
19	chr12:9065200-9066200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr12:9065200-9066200	Flanking Active TSS	Brain Germinal Matrix	brain
21	chr12:9065200-9066400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:9065200-9070200	Active TSS	H9 Cell Line	embryonic stem cell
23	chr12:9065200-9070200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr12:9065400-9066000	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr12:9065400-9066000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:9065400-9066000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:9065400-9066000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:9065400-9066000	Enhancers	Brain Hippocampus Middle	brain
29	chr12:9065400-9066000	Enhancers	Rectal Smooth Muscle	rectum
30	chr12:9065400-9066000	Enhancers	NHLF	lung
31	chr12:9065400-9066200	Flanking Active TSS	Fetal Brain Male	brain
32	chr12:9065400-9066200	Enhancers	Fetal Intestine Large	intestine
33	chr12:9065400-9066400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr12:9065400-9066600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr12:9065400-9066600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr12:9065400-9066600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr12:9065600-9066000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:9065600-9066000	Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr12:9065600-9066000	Enhancers	Primary T cells from cord blood	blood
40	chr12:9065600-9066000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:9065600-9066000	Active TSS	Brain Anterior Caudate	brain
42	chr12:9065600-9066000	Enhancers	Brain Substantia Nigra	brain
43	chr12:9065600-9066000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr12:9065600-9066000	Active TSS	Fetal Kidney	kidney
45	chr12:9065600-9066000	Enhancers	Fetal Muscle Leg	muscle
46	chr12:9065600-9066000	Enhancers	Left Ventricle	heart
47	chr12:9065600-9066000	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr12:9065600-9066000	Enhancers	Stomach Mucosa	stomach
49	chr12:9065600-9066000	Enhancers	NHDF-Ad	bronchial
50	chr12:9065600-9066200	Flanking Active TSS	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links