Variant report

Variant	rs11621756
Chromosome Location	chr14:70985475-70985476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70983745..70986575-chr14:70987708..70990108,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11158873	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11621092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11622303	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623056	0.94[AMR][1000 genomes]
rs11624163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625004	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626625	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11627570	0.88[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629008	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11845123	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848696	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849584	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849745	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17176236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17176306	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17176425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17176459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1959479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35847947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56002948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286045	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009719	1.00[ASN][1000 genomes]
rs8014596	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:70968600-70989400	Weak transcription	Pancreas	Pancrea
4	chr14:70975800-70990000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:70978200-70986600	Weak transcription	Liver	Liver
6	chr14:70978800-70988600	Weak transcription	Ovary	ovary
7	chr14:70979200-70986800	Weak transcription	Primary T cells from cord blood	blood
8	chr14:70980000-70989400	Weak transcription	Brain Angular Gyrus	brain
9	chr14:70981000-70989400	Weak transcription	Brain Substantia Nigra	brain
10	chr14:70981000-70989600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:70981200-70994400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr14:70982000-71003600	Weak transcription	HSMM	muscle
13	chr14:70982400-71003200	Weak transcription	Psoas Muscle	Psoas
14	chr14:70982800-70989400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr14:70983000-70986000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:70983800-70989400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:70984600-70986600	Weak transcription	Fetal Brain Male	brain
18	chr14:70984800-70985800	Strong transcription	HSMMtube	muscle
19	chr14:70985000-70985800	Strong transcription	Adipose Nuclei	Adipose
20	chr14:70985000-70986000	ZNF genes & repeats	Aorta	Aorta
21	chr14:70985200-70985800	Strong transcription	Left Ventricle	heart

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