Variant report

Variant	rs17176236
Chromosome Location	chr14:70991806-70991807
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70866335..70868798-chr14:70990397..70993089,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11158873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11621092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11621756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622303	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623056	0.94[AMR][1000 genomes]
rs11624163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626625	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11627570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11629008	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11845123	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848696	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849584	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849745	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17176306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17176425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17176459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1959479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35847947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56002948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73286045	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009719	1.00[ASN][1000 genomes]
rs8014596	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:70981200-70994400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:70982000-71003600	Weak transcription	HSMM	muscle
4	chr14:70982400-71003200	Weak transcription	Psoas Muscle	Psoas
5	chr14:70985800-71003800	Weak transcription	HSMMtube	muscle
6	chr14:70987600-70993200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr14:70987800-70995800	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:70987800-71005800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:70988000-71028200	Weak transcription	Esophagus	oesophagus
10	chr14:70988000-71029800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:70988400-70994600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:70988400-71003800	Weak transcription	Primary B cells from cord blood	blood
13	chr14:70988600-70993000	Weak transcription	Brain Germinal Matrix	brain
14	chr14:70988600-70993200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:70988600-70997000	Weak transcription	Placenta	Placenta
16	chr14:70988800-71028800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:70989400-70992000	Strong transcription	Adipose Nuclei	Adipose
18	chr14:70989600-70992200	Strong transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:70990000-70993000	Weak transcription	Fetal Heart	heart
20	chr14:70990200-70992600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:70990400-70992800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:70990400-70994800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr14:70990400-71029600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr14:70991200-71006400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:70991400-70993200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:70991400-70993200	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:70991400-70999400	Weak transcription	Primary T cells from cord blood	blood
28	chr14:70991400-71003800	Weak transcription	Brain Substantia Nigra	brain
29	chr14:70991400-71028200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:70991600-70993400	Weak transcription	Fetal Stomach	stomach
31	chr14:70991600-70993400	Weak transcription	Gastric	stomach
32	chr14:70991600-70993800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:70991600-70994400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:70991600-70995200	Weak transcription	Lung	lung
35	chr14:70991600-70996800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:70991600-70998800	Weak transcription	Brain Anterior Caudate	brain
37	chr14:70991600-70999000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:70991600-70999200	Weak transcription	Brain Angular Gyrus	brain
39	chr14:70991600-71001200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr14:70991600-71003800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:70991600-71003800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:70991600-71003800	Weak transcription	Aorta	Aorta
43	chr14:70991600-71003800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:70991600-71003800	Weak transcription	Ovary	ovary
45	chr14:70991600-71003800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:70991600-71003800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr14:70991600-71003800	Weak transcription	Spleen	Spleen
48	chr14:70991600-71004000	Weak transcription	Right Ventricle	heart
49	chr14:70991600-71004000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:70991600-71004200	Weak transcription	Pancreas	Pancrea

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