Variant report

Variant	rs17176459
Chromosome Location	chr14:71086556-71086557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71086221..71087894-chr14:71109543..71111323,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11158873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11621756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11622303	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs11623056	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11624163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11625004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11625581	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11626625	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11627570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11629008	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845123	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848696	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs11849584	0.97[AMR][1000 genomes]
rs11849745	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17176236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17176306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17176425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1959479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35847947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56002948	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56393609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286045	0.97[AMR][1000 genomes]
rs8014596	0.91[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71084400-71088400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71085400-71088000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:71085400-71091600	Weak transcription	HSMMtube	muscle
4	chr14:71086200-71086800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:71086200-71086800	Enhancers	HMEC	breast
6	chr14:71086200-71087000	Enhancers	NHEK	skin
7	chr14:71086200-71088800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:71086400-71086800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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