Variant report

Variant	rs11623863
Chromosome Location	chr14:55134701-55134702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55128710..55133148-chr14:55134666..55138375,4	MCF-7	breast:
2	chr14:55133143..55136599-chr14:55143389..55146746,3	MCF-7	breast:
3	chr14:55134327..55137247-chr14:55150463..55152044,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1998311	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56380805	0.88[EUR][1000 genomes]
rs57146234	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61976963	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61976964	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7147215	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911620	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs911622	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9806117	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755395	chr14:55125925-55149486	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55119800-55135800	Weak transcription	Fetal Brain Male	brain
2	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
3	chr14:55120800-55137400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:55121000-55138200	Weak transcription	Aorta	Aorta
5	chr14:55121400-55136400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:55121800-55135600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:55121800-55135800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:55121800-55135800	Weak transcription	NH-A	brain
9	chr14:55122000-55136200	Weak transcription	Osteobl	bone
10	chr14:55122200-55136000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:55129600-55136200	Weak transcription	A549	lung
12	chr14:55129600-55136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:55129600-55139800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:55129800-55136800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:55129800-55138200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:55130200-55136200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:55130400-55135600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:55130600-55135000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:55130600-55135800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:55130600-55136000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:55130600-55136400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:55130800-55140200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:55131000-55135800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:55131400-55140200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:55132200-55134800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:55132200-55136400	Enhancers	Right Ventricle	heart
27	chr14:55132200-55139400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:55132200-55139600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:55132400-55135600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr14:55132600-55135000	Enhancers	Fetal Muscle Leg	muscle
31	chr14:55132800-55141000	Enhancers	Right Atrium	heart
32	chr14:55132800-55141800	Enhancers	Psoas Muscle	Psoas
33	chr14:55132800-55144400	Enhancers	Left Ventricle	heart
34	chr14:55133000-55136400	Weak transcription	Hela-S3	cervix
35	chr14:55133000-55139000	Weak transcription	GM12878-XiMat	blood
36	chr14:55133000-55143400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:55133200-55134800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr14:55133200-55135600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr14:55133200-55139800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:55133200-55142400	Weak transcription	HUVEC	blood vessel
41	chr14:55133400-55135600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:55133800-55135400	Enhancers	HSMM	muscle
43	chr14:55133800-55135800	Enhancers	Spleen	Spleen
44	chr14:55133800-55136200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr14:55134000-55134800	Enhancers	Brain Substantia Nigra	brain
46	chr14:55134000-55135200	Flanking Active TSS	HSMMtube	muscle
47	chr14:55134000-55135400	Weak transcription	Fetal Brain Female	brain
48	chr14:55134000-55135600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:55134000-55136000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:55134000-55136000	Genic enhancers	NHDF-Ad	bronchial

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