Variant report

Variant	rs57146234
Chromosome Location	chr14:55107639-55107640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55098735..55101842-chr14:55104398..55107671,3	K562	blood:
2	chr14:55094085..55095641-chr14:55105830..55108164,2	MCF-7	breast:
3	chr14:55100227..55102624-chr14:55106650..55109570,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11623863	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1998311	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56380805	0.92[EUR][1000 genomes]
rs61976963	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976964	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7147215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911620	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911622	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9806117	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55070400-55116200	Weak transcription	HMEC	breast
2	chr14:55095200-55109200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:55095600-55109600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:55096000-55109400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:55096200-55109200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:55100200-55109200	Weak transcription	Spleen	Spleen
7	chr14:55102800-55107800	Enhancers	Fetal Muscle Leg	muscle
8	chr14:55103000-55107800	Enhancers	NHDF-Ad	bronchial
9	chr14:55103600-55116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:55104000-55110600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:55104200-55108200	Enhancers	Fetal Heart	heart
12	chr14:55105000-55109200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:55105000-55109200	Weak transcription	Gastric	stomach
14	chr14:55105200-55108800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:55105200-55109200	Weak transcription	NHLF	lung
16	chr14:55105200-55109400	Weak transcription	Fetal Lung	lung
17	chr14:55105200-55109400	Weak transcription	NH-A	brain
18	chr14:55105200-55110200	Weak transcription	Osteobl	bone
19	chr14:55105200-55116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:55105400-55109000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr14:55105400-55109200	Weak transcription	A549	lung
22	chr14:55105400-55116000	Weak transcription	NHEK	skin
23	chr14:55105600-55109000	Enhancers	HepG2	liver
24	chr14:55105600-55109800	Weak transcription	HUVEC	blood vessel
25	chr14:55105600-55110400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:55105600-55111600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:55105800-55107800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr14:55105800-55107800	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr14:55105800-55108000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr14:55105800-55108200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:55105800-55113000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:55106000-55107800	Enhancers	Brain Anterior Caudate	brain
33	chr14:55106000-55108000	Enhancers	Brain Hippocampus Middle	brain
34	chr14:55106000-55110200	Enhancers	Brain Substantia Nigra	brain
35	chr14:55106000-55111400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:55106400-55107800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:55106400-55109200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:55106400-55109200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr14:55106400-55109400	Weak transcription	Lung	lung
40	chr14:55106400-55109600	Weak transcription	HSMMtube	muscle
41	chr14:55106400-55116000	Weak transcription	HSMM	muscle
42	chr14:55106400-55117800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr14:55106600-55109200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:55106600-55109400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:55106600-55109400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr14:55106600-55109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:55106600-55109400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr14:55106600-55109400	Weak transcription	Aorta	Aorta
49	chr14:55106600-55109400	Weak transcription	Right Atrium	heart
50	chr14:55106600-55109600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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