Variant report

Variant	rs7147215
Chromosome Location	chr14:55115028-55115029
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55032684..55035798-chr14:55114530..55116849,3	MCF-7	breast:
2	chr14:55101230..55103764-chr14:55113577..55116049,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11623863	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1998311	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56380805	0.92[EUR][1000 genomes]
rs57146234	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976964	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911620	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911622	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9806117	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55070400-55116200	Weak transcription	HMEC	breast
2	chr14:55103600-55116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:55105200-55116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:55105400-55116000	Weak transcription	NHEK	skin
5	chr14:55106400-55116000	Weak transcription	HSMM	muscle
6	chr14:55106400-55117800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:55107400-55117200	Weak transcription	Fetal Stomach	stomach
8	chr14:55107600-55117000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr14:55107600-55118000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:55107600-55121400	Weak transcription	Pancreas	Pancrea
11	chr14:55107800-55116600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:55109600-55121400	Weak transcription	Spleen	Spleen
13	chr14:55109800-55115400	Weak transcription	Brain Anterior Caudate	brain
14	chr14:55109800-55116600	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:55109800-55117200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:55109800-55119400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:55110200-55116200	Weak transcription	A549	lung
18	chr14:55110200-55117000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr14:55110400-55116000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:55110400-55116200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:55110800-55115800	Weak transcription	Osteobl	bone
22	chr14:55110800-55116000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:55110800-55119600	Weak transcription	Lung	lung
24	chr14:55111000-55115600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:55111000-55116200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:55111000-55117000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr14:55111000-55117200	Enhancers	HepG2	liver
28	chr14:55111400-55116000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:55111400-55116200	Weak transcription	NH-A	brain
30	chr14:55111400-55117000	Weak transcription	Placenta	Placenta
31	chr14:55111600-55115200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:55112400-55116800	Enhancers	NHDF-Ad	bronchial
33	chr14:55112800-55117200	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr14:55113000-55116200	Enhancers	Stomach Smooth Muscle	stomach
35	chr14:55113000-55116600	Enhancers	Right Ventricle	heart
36	chr14:55113200-55122000	Enhancers	Fetal Heart	heart
37	chr14:55113400-55115800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:55113400-55115800	Weak transcription	NHLF	lung
39	chr14:55113400-55116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:55113400-55116000	Weak transcription	Gastric	stomach
41	chr14:55113400-55116200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:55113400-55117200	Weak transcription	Ovary	ovary
43	chr14:55113600-55115800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:55113600-55117000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:55114000-55117400	Enhancers	Colon Smooth Muscle	Colon
46	chr14:55114000-55117400	Enhancers	HUVEC	blood vessel
47	chr14:55114000-55118000	Enhancers	Aorta	Aorta
48	chr14:55114200-55115400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:55114400-55117200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr14:55114600-55115200	Enhancers	Cortex derived primary cultured neurospheres	brain

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