Variant report

Variant	rs61976964
Chromosome Location	chr14:55124096-55124097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55041072..55043932-chr14:55123792..55126617,2	MCF-7	breast:
2	chr14:55112933..55122073-chr14:55122136..55129636,16	MCF-7	breast:
3	chr14:55123104..55125595-chr14:55126892..55129709,3	K562	blood:
4	chr14:55123295..55127297-chr14:55131609..55134377,4	MCF-7	breast:
5	chr14:55119482..55121341-chr14:55121641..55124299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11623863	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1998311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56380805	0.92[EUR][1000 genomes]
rs57146234	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61976963	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7147215	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs911622	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9806117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55117600-55129400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55119000-55132400	Enhancers	HepG2	liver
3	chr14:55119800-55135800	Weak transcription	Fetal Brain Male	brain
4	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
5	chr14:55120200-55124600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:55120800-55125600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:55120800-55137400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:55121000-55124600	Weak transcription	NHEK	skin
9	chr14:55121000-55138200	Weak transcription	Aorta	Aorta
10	chr14:55121200-55124400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:55121200-55126800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:55121400-55136400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:55121600-55125200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:55121600-55125200	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:55121600-55125400	Weak transcription	Placenta	Placenta
16	chr14:55121600-55127200	Weak transcription	Brain Anterior Caudate	brain
17	chr14:55121600-55129400	Weak transcription	Fetal Stomach	stomach
18	chr14:55121600-55129600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:55121800-55124400	Weak transcription	HMEC	breast
20	chr14:55121800-55125200	Weak transcription	Lung	lung
21	chr14:55121800-55125200	Weak transcription	Psoas Muscle	Psoas
22	chr14:55121800-55125400	Weak transcription	A549	lung
23	chr14:55121800-55128400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:55121800-55135600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:55121800-55135800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:55121800-55135800	Weak transcription	NH-A	brain
27	chr14:55122000-55124200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr14:55122000-55124200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:55122000-55124400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:55122000-55124800	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:55122000-55125200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:55122000-55125200	Weak transcription	Spleen	Spleen
33	chr14:55122000-55125400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:55122000-55126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:55122000-55126600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:55122000-55127200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:55122000-55127200	Weak transcription	HSMMtube	muscle
38	chr14:55122000-55131000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:55122000-55134000	Weak transcription	Brain Substantia Nigra	brain
40	chr14:55122000-55134200	Weak transcription	NHLF	lung
41	chr14:55122000-55136200	Weak transcription	Osteobl	bone
42	chr14:55122200-55124400	Weak transcription	Left Ventricle	heart
43	chr14:55122200-55124400	Weak transcription	HUVEC	blood vessel
44	chr14:55122200-55125000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:55122200-55125200	Weak transcription	Right Atrium	heart
46	chr14:55122200-55125200	Weak transcription	Right Ventricle	heart
47	chr14:55122200-55125400	Weak transcription	Adipose Nuclei	Adipose
48	chr14:55122200-55125400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:55122200-55125400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr14:55122200-55125400	Weak transcription	HSMM	muscle

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