Variant report

Variant	rs1162860
Chromosome Location	chr5:94686804-94686805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10061291	0.82[ASN][1000 genomes]
rs1162861	0.92[ASN][1000 genomes]
rs1363428	0.81[ASN][1000 genomes]
rs181880	0.92[CHB][hapmap]
rs1895248	0.81[ASN][1000 genomes]
rs1895249	0.81[ASN][1000 genomes]
rs2194089	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2432174	0.81[ASN][1000 genomes]
rs2434250	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2434251	0.81[ASN][1000 genomes]
rs2546102	0.82[AMR][1000 genomes]
rs2546103	0.82[AMR][1000 genomes]
rs2546104	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs255963	0.81[ASN][1000 genomes]
rs255964	0.81[ASN][1000 genomes]
rs2731837	0.85[AMR][1000 genomes]
rs33365	0.92[ASN][1000 genomes]
rs33366	0.92[ASN][1000 genomes]
rs33367	0.92[ASN][1000 genomes]
rs33892	0.85[CHB][hapmap]
rs41121	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94684400-94688400	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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