Variant report

Variant	rs33365
Chromosome Location	chr5:94682990-94682991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10061291	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1162860	0.92[ASN][1000 genomes]
rs1162861	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1363428	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs181880	0.84[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes]
rs1820041	0.83[AMR][1000 genomes]
rs185249	0.88[AMR][1000 genomes]
rs1895248	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1895249	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2194089	0.86[ASN][1000 genomes]
rs2432174	0.86[ASN][1000 genomes]
rs2434250	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2434251	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs253708	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs253712	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2546097	0.84[AFR][1000 genomes]
rs2546102	0.83[ASN][1000 genomes]
rs2546103	0.83[ASN][1000 genomes]
rs2546104	0.87[ASN][1000 genomes]
rs255961	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs255962	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255963	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255964	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255965	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255966	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255967	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255968	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2560278	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs26393	0.87[JPT][hapmap]
rs26394	0.87[JPT][hapmap]
rs26395	0.87[JPT][hapmap]
rs2731835	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2731837	0.83[ASN][1000 genomes]
rs27767	0.87[JPT][hapmap]
rs33366	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33367	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33811	0.87[JPT][hapmap]
rs33892	1.00[JPT][hapmap]
rs396185	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs403916	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41121	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94682600-94684200	Enhancers	Fetal Brain Female	brain
2	chr5:94682800-94684400	Enhancers	Fetal Brain Male	brain

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