Variant report

Variant	rs255962
Chromosome Location	chr5:94663247-94663248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1162861	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs154056	0.83[ASN][1000 genomes]
rs154057	0.83[ASN][1000 genomes]
rs2434250	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs255961	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255963	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255964	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255965	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255966	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255967	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255968	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255979	0.83[ASN][1000 genomes]
rs255980	0.81[ASN][1000 genomes]
rs255981	0.83[ASN][1000 genomes]
rs255983	0.83[ASN][1000 genomes]
rs255984	0.83[ASN][1000 genomes]
rs255985	0.83[ASN][1000 genomes]
rs255986	0.83[ASN][1000 genomes]
rs255987	0.85[ASN][1000 genomes]
rs255988	0.90[ASN][1000 genomes]
rs26393	0.81[ASN][1000 genomes]
rs26394	0.81[ASN][1000 genomes]
rs26395	0.81[ASN][1000 genomes]
rs27767	0.81[ASN][1000 genomes]
rs33365	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33366	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33367	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33811	0.81[ASN][1000 genomes]
rs33813	0.81[ASN][1000 genomes]
rs395031	0.83[ASN][1000 genomes]
rs396185	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs403916	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs414420	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94661200-94665200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:94662600-94663400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:94663000-94663600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:94663000-94663600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:94663000-94663800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:94663200-94664000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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