Variant report

Variant	rs26393
Chromosome Location	chr5:94623246-94623247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr5:94623100-94623340	HepG2	liver:	n/a	n/a
2	FOXA1	chr5:94623035-94623362	HepG2	liver:	n/a	n/a
3	FOXA1	chr5:94623021-94623402	HepG2	liver:	n/a	n/a
4	FOXA1	chr5:94623069-94623356	HepG2	liver:	n/a	n/a
5	FOXA1	chr5:94623089-94623374	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94621825..94623939-chr5:94624128..94625993,2	K562	blood:
2	chr5:94619081..94620900-chr5:94622746..94625124,2	K562	blood:

Variant related genes	Relation type
MCTP1	TF binding region
ENSG00000175471	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10050382	0.82[EUR][1000 genomes]
rs10057040	0.85[EUR][1000 genomes]
rs10058623	0.82[EUR][1000 genomes]
rs10060946	0.83[EUR][1000 genomes]
rs10064420	0.81[EUR][1000 genomes]
rs10066492	0.85[EUR][1000 genomes]
rs10068165	0.83[EUR][1000 genomes]
rs10068954	0.85[EUR][1000 genomes]
rs10073184	0.83[EUR][1000 genomes]
rs10079049	0.81[EUR][1000 genomes]
rs10515223	0.84[EUR][1000 genomes]
rs154056	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154057	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154062	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs154063	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs154064	0.83[EUR][1000 genomes]
rs154066	0.81[EUR][1000 genomes]
rs17349336	0.83[EUR][1000 genomes]
rs181880	0.87[JPT][hapmap]
rs255962	0.81[ASN][1000 genomes]
rs255963	0.82[ASN][1000 genomes]
rs255964	0.82[ASN][1000 genomes]
rs255965	0.81[ASN][1000 genomes]
rs255966	0.81[ASN][1000 genomes]
rs255967	0.81[ASN][1000 genomes]
rs255968	0.81[ASN][1000 genomes]
rs255979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255980	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255981	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255983	0.97[ASN][1000 genomes]
rs255984	0.97[ASN][1000 genomes]
rs255985	0.97[ASN][1000 genomes]
rs255986	0.97[ASN][1000 genomes]
rs255987	0.95[ASN][1000 genomes]
rs255988	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26395	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27688	0.93[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs27767	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27768	0.90[CEU][hapmap]
rs3104738	0.84[EUR][1000 genomes]
rs33809	0.87[JPT][hapmap]
rs33810	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33813	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33892	0.86[JPT][hapmap]
rs395031	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs396185	0.82[ASN][1000 genomes]
rs397826	0.92[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs403916	0.81[ASN][1000 genomes]
rs41121	0.87[JPT][hapmap]
rs414420	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs421754	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs443272	0.80[CHB][hapmap];0.88[ASN][1000 genomes]
rs448433	0.93[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs455516	0.83[EUR][1000 genomes]
rs457568	0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs457819	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs458134	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs458663	0.93[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs458978	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs459730	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs460102	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs460363	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs460924	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs461059	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs462526	0.93[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs462828	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs462862	0.93[CEU][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs463261	0.93[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs463587	0.87[CEU][hapmap];0.80[CHB][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs463961	0.93[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs464001	0.84[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs464008	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs464084	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs464158	0.93[CEU][hapmap]
rs464242	0.86[CEU][hapmap]
rs464906	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs464971	0.93[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs465847	0.87[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs466024	0.93[CEU][hapmap]
rs467144	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs669335	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs686420	0.87[CEU][hapmap]
rs7349800	0.81[EUR][1000 genomes]
rs73776337	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94622200-94623400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
2	chr5:94623000-94623600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr5:94623000-94623600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
4	chr5:94623000-94623800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr5:94623200-94623400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:94623200-94623600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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