Variant report

Variant	rs10058623
Chromosome Location	chr5:94580597-94580598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10050382	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10057040	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10060946	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10064420	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066492	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10068165	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10068954	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10069998	0.91[ASN][1000 genomes]
rs10073184	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10075123	0.89[ASN][1000 genomes]
rs10079049	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10515223	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154056	0.84[EUR][1000 genomes]
rs154057	0.84[EUR][1000 genomes]
rs154061	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs154062	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154064	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs154066	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17349336	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs255979	0.82[EUR][1000 genomes]
rs255980	0.84[EUR][1000 genomes]
rs255981	0.84[EUR][1000 genomes]
rs26393	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs26394	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs26395	0.88[CEU][hapmap]
rs27688	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs27767	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs27768	0.90[CEU][hapmap]
rs3104738	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33810	0.83[EUR][1000 genomes]
rs33811	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs33813	0.83[EUR][1000 genomes]
rs395031	0.84[EUR][1000 genomes]
rs397826	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs421754	0.91[EUR][1000 genomes]
rs443272	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs448433	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs455516	0.92[EUR][1000 genomes]
rs457568	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs457819	0.91[EUR][1000 genomes]
rs458134	0.91[EUR][1000 genomes]
rs458663	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs458978	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs459730	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs460102	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs460363	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs460924	0.91[EUR][1000 genomes]
rs461059	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs462526	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs462828	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs462862	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs463261	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs463587	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs463961	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs464001	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs464008	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs464084	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs464158	0.93[CEU][hapmap]
rs464242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs464971	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs465847	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs466024	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs467144	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs686420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7349800	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73776337	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94580200-94580600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:94580200-94580800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links