Variant report

Variant	rs154061
Chromosome Location	chr5:94595494-94595495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94589901..94592049-chr5:94594362..94596011,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10050382	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10057040	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10058623	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10060946	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10064420	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10066492	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10068165	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10068954	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10069998	0.89[ASN][1000 genomes]
rs10073184	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10075123	0.87[ASN][1000 genomes]
rs10079049	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10515223	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154062	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154063	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154064	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154066	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17349336	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3104738	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs397826	0.93[EUR][1000 genomes]
rs421754	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs448433	0.91[EUR][1000 genomes]
rs455516	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs457819	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs458134	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs458663	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs458978	0.89[EUR][1000 genomes]
rs459730	0.89[EUR][1000 genomes]
rs460102	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs460363	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs460924	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs461059	0.89[EUR][1000 genomes]
rs462526	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs462828	0.88[EUR][1000 genomes]
rs462862	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs463261	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs463587	0.88[EUR][1000 genomes]
rs463961	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs464001	0.89[EUR][1000 genomes]
rs464008	0.88[EUR][1000 genomes]
rs464084	0.88[EUR][1000 genomes]
rs464971	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs465847	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs467144	0.93[EUR][1000 genomes]
rs7349800	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73776337	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94593600-94596800	Weak transcription	HUVEC	blood vessel
2	chr5:94595200-94598000	Weak transcription	Fetal Intestine Small	intestine

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