Variant report

Variant	rs7349800
Chromosome Location	chr5:94560428-94560429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10044143	0.87[ASN][1000 genomes]
rs10050382	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10057040	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10058623	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10060946	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10064420	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10066492	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10068165	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10068954	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10069998	1.00[ASN][1000 genomes]
rs10072003	0.87[ASN][1000 genomes]
rs10073182	0.87[ASN][1000 genomes]
rs10073184	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10073604	0.87[ASN][1000 genomes]
rs10075123	0.98[ASN][1000 genomes]
rs10077145	0.83[ASN][1000 genomes]
rs10079049	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515223	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13163584	0.87[ASN][1000 genomes]
rs154061	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs154062	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154063	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154064	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154066	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17349336	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255979	0.81[EUR][1000 genomes]
rs26393	0.81[EUR][1000 genomes]
rs26394	0.81[EUR][1000 genomes]
rs27688	0.82[EUR][1000 genomes]
rs3104738	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33810	0.81[EUR][1000 genomes]
rs35698400	0.83[ASN][1000 genomes]
rs36100739	0.85[ASN][1000 genomes]
rs397826	0.96[EUR][1000 genomes]
rs421754	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs448433	0.94[EUR][1000 genomes]
rs455516	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs457568	0.82[EUR][1000 genomes]
rs457819	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs458134	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs458663	0.93[EUR][1000 genomes]
rs458978	0.93[EUR][1000 genomes]
rs459730	0.93[EUR][1000 genomes]
rs460102	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs460363	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs460924	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs461059	0.93[EUR][1000 genomes]
rs462526	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs462828	0.90[EUR][1000 genomes]
rs462862	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs463261	0.93[EUR][1000 genomes]
rs463587	0.90[EUR][1000 genomes]
rs463961	0.93[EUR][1000 genomes]
rs464001	0.89[EUR][1000 genomes]
rs464008	0.90[EUR][1000 genomes]
rs464084	0.92[EUR][1000 genomes]
rs464971	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs465847	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs467144	0.96[EUR][1000 genomes]
rs56244253	0.85[ASN][1000 genomes]
rs71630703	0.84[ASN][1000 genomes]
rs71630704	0.87[ASN][1000 genomes]
rs71630705	0.87[ASN][1000 genomes]
rs71630706	0.87[ASN][1000 genomes]
rs73776337	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314133	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94559200-94561200	Enhancers	HUVEC	blood vessel
2	chr5:94559800-94560600	Enhancers	Stomach Mucosa	stomach
3	chr5:94560200-94561000	Enhancers	Fetal Intestine Small	intestine

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