Variant report

Variant	rs10057040
Chromosome Location	chr5:94574522-94574523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94304130..94305536-chr5:94574079..94575324,9	MCF-7	breast:
2	chr5:94571972..94575746-chr5:94575947..94580210,4	K562	blood:
3	chr5:94303787..94305538-chr5:94574100..94575359,14	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10044143	0.82[ASN][1000 genomes]
rs10050382	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10058623	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10060946	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066492	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068165	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068954	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069998	0.95[ASN][1000 genomes]
rs10072003	0.82[ASN][1000 genomes]
rs10073182	0.82[ASN][1000 genomes]
rs10073184	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073604	0.82[ASN][1000 genomes]
rs10075123	0.93[ASN][1000 genomes]
rs10079049	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515223	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163584	0.82[ASN][1000 genomes]
rs154056	0.87[EUR][1000 genomes]
rs154057	0.87[EUR][1000 genomes]
rs154061	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154062	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154064	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154066	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17349336	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255979	0.85[EUR][1000 genomes]
rs255980	0.87[EUR][1000 genomes]
rs255981	0.87[EUR][1000 genomes]
rs255988	0.81[EUR][1000 genomes]
rs26393	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs26394	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs26395	0.87[CEU][hapmap]
rs27688	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs27767	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs27768	0.90[CEU][hapmap]
rs3104738	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33810	0.85[EUR][1000 genomes]
rs33811	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs33813	0.86[EUR][1000 genomes]
rs36100739	0.80[ASN][1000 genomes]
rs395031	0.87[EUR][1000 genomes]
rs397826	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs414420	0.81[EUR][1000 genomes]
rs421754	0.94[EUR][1000 genomes]
rs443272	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs448433	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs455516	0.95[EUR][1000 genomes]
rs457568	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs457819	0.94[EUR][1000 genomes]
rs458134	0.94[EUR][1000 genomes]
rs458663	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs458978	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs459730	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs460102	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs460363	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs460924	0.94[EUR][1000 genomes]
rs461059	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs462526	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs462828	0.96[EUR][1000 genomes]
rs462862	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs463261	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs463587	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs463961	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs464001	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs464008	0.96[EUR][1000 genomes]
rs464084	0.98[EUR][1000 genomes]
rs464158	0.92[CEU][hapmap]
rs464242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs464971	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs465847	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs466024	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs467144	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs56244253	0.80[ASN][1000 genomes]
rs686420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71630703	0.80[ASN][1000 genomes]
rs71630704	0.82[ASN][1000 genomes]
rs71630705	0.82[ASN][1000 genomes]
rs71630706	0.82[ASN][1000 genomes]
rs7349800	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73776337	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314133	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94573800-94574600	Enhancers	Fetal Brain Female	brain
2	chr5:94574000-94574600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:94574200-94574600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:94574200-94574600	Enhancers	HSMM	muscle
5	chr5:94574200-94574800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr5:94574200-94574800	Enhancers	Fetal Brain Male	brain
7	chr5:94574200-94574800	Flanking Active TSS	NH-A	brain
8	chr5:94574400-94574600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:94574400-94574600	Enhancers	Brain Anterior Caudate	brain
10	chr5:94574400-94574800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94574400-94574800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:94574400-94574800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:94574400-94574800	Flanking Active TSS	HUVEC	blood vessel
14	chr5:94574400-94574800	Flanking Active TSS	Osteobl	bone

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