Variant report

Variant	rs27688
Chromosome Location	chr5:94615820-94615821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10050382	0.86[EUR][1000 genomes]
rs10057040	0.88[EUR][1000 genomes]
rs10058623	0.86[EUR][1000 genomes]
rs10060946	0.86[EUR][1000 genomes]
rs10064420	0.85[EUR][1000 genomes]
rs10066492	0.88[EUR][1000 genomes]
rs10068165	0.86[EUR][1000 genomes]
rs10068954	0.88[EUR][1000 genomes]
rs10073184	0.83[EUR][1000 genomes]
rs10079049	0.84[EUR][1000 genomes]
rs10515223	0.89[EUR][1000 genomes]
rs154056	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs154057	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs154062	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs154063	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs154064	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs154066	0.86[EUR][1000 genomes]
rs17349336	0.85[EUR][1000 genomes]
rs255979	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255980	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs255981	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255983	0.86[ASN][1000 genomes]
rs255984	0.86[ASN][1000 genomes]
rs255985	0.86[ASN][1000 genomes]
rs255986	0.86[ASN][1000 genomes]
rs255987	0.85[ASN][1000 genomes]
rs255988	0.89[EUR][1000 genomes]
rs26392	0.83[EUR][1000 genomes]
rs26393	0.93[CEU][hapmap];0.91[CHB][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26394	0.93[CEU][hapmap];0.90[CHB][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs26395	0.94[CEU][hapmap];0.90[CHB][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs27767	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs27768	1.00[JPT][hapmap]
rs3104738	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs33810	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33811	0.93[CEU][hapmap];0.90[CHB][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33813	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs395031	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs397826	0.85[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs414420	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs421754	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs443272	0.81[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs448433	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs455516	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs457568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs457819	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs458134	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs458663	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs458978	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs459730	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs460102	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs460363	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs460924	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs461018	0.87[ASN][1000 genomes]
rs461059	0.93[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs462526	0.85[CEU][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs462828	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs462862	0.86[CEU][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs463261	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs463587	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs463961	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs464001	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs464008	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs464084	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs464158	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs464242	0.93[CEU][hapmap]
rs464906	0.90[CHB][hapmap];0.84[JPT][hapmap];0.95[ASN][1000 genomes]
rs464971	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs465847	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs466024	0.87[CEU][hapmap]
rs467144	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs669335	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs686420	0.93[CEU][hapmap]
rs7349800	0.82[EUR][1000 genomes]
rs73776337	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94602400-94616200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:94613600-94616200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:94613600-94616200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:94613600-94616200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:94613600-94616400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:94615400-94616800	Enhancers	Fetal Brain Male	brain
7	chr5:94615600-94616400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:94615800-94618800	Active TSS	Fetal Brain Female	brain

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