Variant report

Variant	rs255983
Chromosome Location	chr5:94654187-94654188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs154056	1.00[ASN][1000 genomes]
rs154057	1.00[ASN][1000 genomes]
rs181880	0.87[JPT][hapmap]
rs255961	0.81[ASN][1000 genomes]
rs255962	0.83[ASN][1000 genomes]
rs255963	0.84[ASN][1000 genomes]
rs255964	0.84[ASN][1000 genomes]
rs255965	0.83[ASN][1000 genomes]
rs255966	0.83[ASN][1000 genomes]
rs255967	0.83[ASN][1000 genomes]
rs255968	0.83[ASN][1000 genomes]
rs255979	1.00[ASN][1000 genomes]
rs255980	0.97[ASN][1000 genomes]
rs255981	1.00[ASN][1000 genomes]
rs255984	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255985	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255986	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255987	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs255988	0.93[ASN][1000 genomes]
rs26393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs26394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs26395	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27688	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs27767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs33809	0.87[JPT][hapmap]
rs33810	0.95[ASN][1000 genomes]
rs33811	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[ASN][1000 genomes]
rs33813	0.97[ASN][1000 genomes]
rs33892	0.85[JPT][hapmap]
rs395031	1.00[ASN][1000 genomes]
rs396185	0.84[ASN][1000 genomes]
rs397826	0.80[ASN][1000 genomes]
rs403916	0.83[ASN][1000 genomes]
rs41121	0.87[JPT][hapmap]
rs414420	0.94[ASN][1000 genomes]
rs421754	0.80[ASN][1000 genomes]
rs443272	0.80[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.84[ASN][1000 genomes]
rs448433	0.80[CHB][hapmap];0.87[CHD][hapmap];0.80[ASN][1000 genomes]
rs457568	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs458134	0.80[ASN][1000 genomes]
rs458663	0.82[ASN][1000 genomes]
rs460102	0.87[CHD][hapmap]
rs460924	0.80[ASN][1000 genomes]
rs462828	0.82[ASN][1000 genomes]
rs462862	0.82[ASN][1000 genomes]
rs463261	0.82[ASN][1000 genomes]
rs463587	0.80[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.83[ASN][1000 genomes]
rs463961	0.82[ASN][1000 genomes]
rs464001	0.82[ASN][1000 genomes]
rs464008	0.82[ASN][1000 genomes]
rs464906	0.80[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs464971	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs465847	0.80[ASN][1000 genomes]
rs467144	0.87[CHD][hapmap]
rs669335	0.90[CHB][hapmap];0.90[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs255983	C5orf27	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94653000-94655400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:94653200-94655200	Enhancers	Adipose Nuclei	Adipose
3	chr5:94653400-94654600	Enhancers	Fetal Muscle Leg	muscle
4	chr5:94653800-94654200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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