Variant report

Variant	rs403916
Chromosome Location	chr5:94668415-94668416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1162861	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs154056	0.83[ASN][1000 genomes]
rs154057	0.83[ASN][1000 genomes]
rs181880	0.87[CHD][hapmap];0.87[JPT][hapmap]
rs2434250	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs255961	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255962	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255963	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255964	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs255965	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255966	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255967	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255979	0.83[ASN][1000 genomes]
rs255980	0.81[ASN][1000 genomes]
rs255981	0.83[ASN][1000 genomes]
rs255983	0.83[ASN][1000 genomes]
rs255984	0.83[ASN][1000 genomes]
rs255985	0.83[ASN][1000 genomes]
rs255986	0.83[ASN][1000 genomes]
rs255987	0.85[ASN][1000 genomes]
rs255988	0.87[ASN][1000 genomes]
rs26393	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs26394	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs26395	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs27767	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs33365	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33366	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33367	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33809	0.87[JPT][hapmap]
rs33811	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs33813	0.81[ASN][1000 genomes]
rs33892	0.85[JPT][hapmap]
rs395031	0.83[ASN][1000 genomes]
rs396185	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41121	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs414420	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs403916	C5orf27	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94668200-94669000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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