Variant report

Variant	rs414420
Chromosome Location	chr5:94655785-94655786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10057040	0.81[EUR][1000 genomes]
rs10066492	0.81[EUR][1000 genomes]
rs10068954	0.81[EUR][1000 genomes]
rs10515223	0.80[EUR][1000 genomes]
rs154056	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154057	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255961	0.86[ASN][1000 genomes]
rs255962	0.89[ASN][1000 genomes]
rs255963	0.87[ASN][1000 genomes]
rs255964	0.87[ASN][1000 genomes]
rs255965	0.86[ASN][1000 genomes]
rs255966	0.86[ASN][1000 genomes]
rs255967	0.86[ASN][1000 genomes]
rs255968	0.86[ASN][1000 genomes]
rs255979	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255980	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs255981	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255983	0.94[ASN][1000 genomes]
rs255984	0.94[ASN][1000 genomes]
rs255985	0.94[ASN][1000 genomes]
rs255986	0.94[ASN][1000 genomes]
rs255987	0.92[ASN][1000 genomes]
rs255988	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26393	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26394	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26395	0.91[ASN][1000 genomes]
rs27688	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs27767	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3104738	0.80[EUR][1000 genomes]
rs33810	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs33811	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33813	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs395031	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs396185	0.90[ASN][1000 genomes]
rs397826	0.80[EUR][1000 genomes]
rs403916	0.86[ASN][1000 genomes]
rs421754	0.80[EUR][1000 genomes]
rs457568	0.89[EUR][1000 genomes]
rs457819	0.80[EUR][1000 genomes]
rs458134	0.80[EUR][1000 genomes]
rs458978	0.80[EUR][1000 genomes]
rs459730	0.80[EUR][1000 genomes]
rs460102	0.80[EUR][1000 genomes]
rs460924	0.80[EUR][1000 genomes]
rs461059	0.80[EUR][1000 genomes]
rs462526	0.80[EUR][1000 genomes]
rs463587	0.81[EUR][1000 genomes]
rs464001	0.80[EUR][1000 genomes]
rs464084	0.81[EUR][1000 genomes]
rs465847	0.80[EUR][1000 genomes]
rs467144	0.80[EUR][1000 genomes]
rs73776337	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94655400-94656200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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