Variant report

Variant	rs33810
Chromosome Location	chr5:94621643-94621644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr5:94621109-94621686	HEK293	kidney:	n/a	chr5:94621311-94621320 chr5:94621308-94621324
2	TCF7L2	chr5:94620748-94621648	PANC-1	pancreas:	n/a	chr5:94621311-94621320 chr5:94621308-94621324
3	KAP1	chr5:94621097-94621662	U2OS	brain:	n/a	n/a
4	ZNF263	chr5:94618838-94621747	HEK293-T-REx	kidney:	n/a	chr5:94620353-94620362 chr5:94619772-94619793

Variant related genes	Relation type
MCTP1	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10050382	0.83[EUR][1000 genomes]
rs10057040	0.85[EUR][1000 genomes]
rs10058623	0.83[EUR][1000 genomes]
rs10060946	0.84[EUR][1000 genomes]
rs10064420	0.82[EUR][1000 genomes]
rs10066492	0.85[EUR][1000 genomes]
rs10068165	0.84[EUR][1000 genomes]
rs10068954	0.85[EUR][1000 genomes]
rs10073184	0.84[EUR][1000 genomes]
rs10079049	0.81[EUR][1000 genomes]
rs10515223	0.84[EUR][1000 genomes]
rs154056	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154057	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154062	0.83[EUR][1000 genomes]
rs154063	0.84[EUR][1000 genomes]
rs154064	0.84[EUR][1000 genomes]
rs154066	0.82[EUR][1000 genomes]
rs17349336	0.84[EUR][1000 genomes]
rs255963	0.80[ASN][1000 genomes]
rs255964	0.80[ASN][1000 genomes]
rs255979	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255980	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs255981	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255983	0.95[ASN][1000 genomes]
rs255984	0.95[ASN][1000 genomes]
rs255985	0.95[ASN][1000 genomes]
rs255986	0.95[ASN][1000 genomes]
rs255987	0.94[ASN][1000 genomes]
rs255988	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26392	0.81[EUR][1000 genomes]
rs26393	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26394	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26395	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27688	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs27767	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3104738	0.84[EUR][1000 genomes]
rs33811	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33813	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs395031	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs396185	0.80[ASN][1000 genomes]
rs397826	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs414420	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs421754	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs443272	0.89[ASN][1000 genomes]
rs448433	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs455516	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs457568	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs457819	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs458134	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs458663	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs458978	0.84[EUR][1000 genomes]
rs459730	0.84[EUR][1000 genomes]
rs460102	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs460363	0.84[EUR][1000 genomes]
rs460924	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs461059	0.84[EUR][1000 genomes]
rs462526	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs462828	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs462862	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs463261	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs463587	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs463961	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs464001	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs464008	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs464084	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs464906	0.86[ASN][1000 genomes]
rs464971	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs465847	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs467144	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs669335	0.88[ASN][1000 genomes]
rs7349800	0.81[EUR][1000 genomes]
rs73776337	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94619200-94621800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr5:94619400-94621800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr5:94620000-94621800	Active TSS	Right Atrium	heart
4	chr5:94621200-94621800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr5:94621200-94621800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
6	chr5:94621400-94621800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:94621600-94621800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
8	chr5:94621600-94621800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr5:94621600-94621800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr5:94621600-94621800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr5:94621600-94622000	Bivalent Enhancer	Fetal Brain Male	brain

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