Variant report

Variant	rs465847
Chromosome Location	chr5:94606360-94606361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94597141..94599920-chr5:94605334..94608119,2	MCF-7	breast:
2	chr5:94603930..94606301-chr5:94606313..94609446,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10050382	0.91[EUR][1000 genomes]
rs10057040	0.94[EUR][1000 genomes]
rs10058623	0.91[EUR][1000 genomes]
rs10060946	0.92[EUR][1000 genomes]
rs10064420	0.90[EUR][1000 genomes]
rs10066492	0.94[EUR][1000 genomes]
rs10068165	0.92[EUR][1000 genomes]
rs10068954	0.94[EUR][1000 genomes]
rs10073184	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10079049	0.89[EUR][1000 genomes]
rs10515223	0.94[EUR][1000 genomes]
rs154056	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs154057	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs154061	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs154062	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs154063	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs154064	0.94[EUR][1000 genomes]
rs154066	0.92[EUR][1000 genomes]
rs17349336	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs255979	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs255980	0.82[EUR][1000 genomes]
rs255981	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs255983	0.80[ASN][1000 genomes]
rs255984	0.80[ASN][1000 genomes]
rs255985	0.80[ASN][1000 genomes]
rs255986	0.80[ASN][1000 genomes]
rs255988	0.80[EUR][1000 genomes]
rs26393	0.87[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs26394	0.87[CEU][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs26395	0.83[ASN][1000 genomes]
rs27688	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27767	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs27768	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3104738	0.94[EUR][1000 genomes]
rs33810	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs33811	0.87[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33813	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs395031	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs397826	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414420	0.80[EUR][1000 genomes]
rs421754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs448433	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs455516	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs457568	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs457819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs458134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs458663	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs458978	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs459730	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs460102	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs460363	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs460924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs461018	0.94[ASN][1000 genomes]
rs461059	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs462526	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs462828	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs462862	0.93[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs463261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs463587	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs463961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464001	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464008	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464084	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464158	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs464242	0.86[CEU][hapmap];0.83[YRI][hapmap]
rs464906	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs464971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs466024	0.93[CEU][hapmap]
rs467144	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs669335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs686420	0.87[CEU][hapmap]
rs7349800	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73776337	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94602400-94616200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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