Variant report

Variant	rs464242
Chromosome Location	chr5:94593148-94593149
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94588458..94590662-chr5:94590728..94593197,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10044143	0.82[ASN][1000 genomes]
rs10050382	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057040	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058623	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10060946	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064420	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066492	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068165	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068954	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069998	0.95[ASN][1000 genomes]
rs10072003	0.82[ASN][1000 genomes]
rs10073182	0.82[ASN][1000 genomes]
rs10073184	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073604	0.82[ASN][1000 genomes]
rs10075123	0.93[ASN][1000 genomes]
rs10079049	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515223	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163584	0.82[ASN][1000 genomes]
rs154056	0.83[EUR][1000 genomes]
rs154057	0.83[EUR][1000 genomes]
rs154061	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154062	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154064	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154066	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17349336	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255979	0.81[EUR][1000 genomes]
rs255980	0.83[EUR][1000 genomes]
rs255981	0.83[EUR][1000 genomes]
rs26393	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs26394	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs26395	0.87[CEU][hapmap]
rs27688	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs27767	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs27768	0.89[CEU][hapmap]
rs3104738	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33810	0.82[EUR][1000 genomes]
rs33811	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs33813	0.82[EUR][1000 genomes]
rs36100739	0.80[ASN][1000 genomes]
rs395031	0.83[EUR][1000 genomes]
rs397826	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs421754	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs443272	0.87[CEU][hapmap];0.89[AMR][1000 genomes]
rs448433	0.92[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs455516	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs457568	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs457819	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458134	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458663	0.92[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs458978	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs459730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs460102	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs460363	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs460924	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs461059	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs462526	0.92[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs462828	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs462862	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs463261	0.93[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs463587	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs463961	0.93[CEU][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs464001	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs464008	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs464084	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs464158	0.93[CEU][hapmap];0.83[YRI][hapmap]
rs464971	0.93[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs465847	0.86[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs466024	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs467144	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56244253	0.80[ASN][1000 genomes]
rs686420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71630703	0.80[ASN][1000 genomes]
rs71630704	0.82[ASN][1000 genomes]
rs71630705	0.82[ASN][1000 genomes]
rs71630706	0.82[ASN][1000 genomes]
rs7349800	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73776337	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314133	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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