Variant report

Variant	rs26395
Chromosome Location	chr5:94625604-94625605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94619573..94621478-chr5:94625181..94627595,2	K562	blood:
2	chr5:94621825..94623939-chr5:94624128..94625993,2	K562	blood:

Variant related genes	Relation type
ENSG00000175471	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs154056	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154057	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs154062	0.82[CEU][hapmap]
rs154063	0.88[CEU][hapmap]
rs181880	0.87[JPT][hapmap]
rs255962	0.81[ASN][1000 genomes]
rs255963	0.82[ASN][1000 genomes]
rs255964	0.82[ASN][1000 genomes]
rs255965	0.81[ASN][1000 genomes]
rs255966	0.81[ASN][1000 genomes]
rs255967	0.81[ASN][1000 genomes]
rs255968	0.81[ASN][1000 genomes]
rs255979	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255980	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs255981	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255983	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255984	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255985	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255986	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255987	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs255988	0.90[ASN][1000 genomes]
rs26393	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26394	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27688	0.94[CEU][hapmap];0.90[CHB][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs27767	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33809	0.87[JPT][hapmap]
rs33810	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs33811	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33813	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33892	0.85[JPT][hapmap]
rs395031	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs396185	0.82[ASN][1000 genomes]
rs397826	0.83[ASN][1000 genomes]
rs403916	0.81[ASN][1000 genomes]
rs41121	0.87[JPT][hapmap]
rs414420	0.91[ASN][1000 genomes]
rs421754	0.83[ASN][1000 genomes]
rs443272	0.80[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.88[ASN][1000 genomes]
rs448433	0.80[CEU][hapmap];0.80[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs457568	0.92[CEU][hapmap];0.89[CHB][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs457819	0.82[ASN][1000 genomes]
rs458134	0.83[ASN][1000 genomes]
rs458663	0.80[CEU][hapmap];0.85[ASN][1000 genomes]
rs458978	0.88[CEU][hapmap]
rs459730	0.88[CEU][hapmap]
rs460102	0.82[CEU][hapmap];0.87[CHD][hapmap]
rs460363	0.82[CEU][hapmap]
rs460924	0.83[ASN][1000 genomes]
rs461059	0.88[CEU][hapmap]
rs462526	0.80[CEU][hapmap];0.82[ASN][1000 genomes]
rs462828	0.85[ASN][1000 genomes]
rs462862	0.81[CEU][hapmap];0.85[ASN][1000 genomes]
rs463261	0.81[CEU][hapmap];0.85[ASN][1000 genomes]
rs463587	0.88[CEU][hapmap];0.80[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.86[ASN][1000 genomes]
rs463961	0.81[CEU][hapmap];0.85[ASN][1000 genomes]
rs464001	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs464008	0.85[ASN][1000 genomes]
rs464084	0.82[ASN][1000 genomes]
rs464158	0.81[CEU][hapmap]
rs464242	0.87[CEU][hapmap]
rs464906	0.80[CHB][hapmap];0.91[CHD][hapmap];0.85[ASN][1000 genomes]
rs464971	0.82[CEU][hapmap];0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs465847	0.83[ASN][1000 genomes]
rs466024	0.82[CEU][hapmap]
rs467144	0.82[CEU][hapmap];0.87[CHD][hapmap]
rs58576599	0.82[AFR][1000 genomes]
rs669335	0.90[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs686420	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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