Variant report

Variant	rs154063
Chromosome Location	chr5:94597642-94597643
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94597141..94599920-chr5:94605334..94608119,2	MCF-7	breast:
2	chr5:93860401..93861204-chr5:94596965..94597726,2	MCF-7	breast:
3	chr5:94303824..94305467-chr5:94596777..94598299,13	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10044143	0.82[ASN][1000 genomes]
rs10050382	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10057040	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058623	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10060946	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064420	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066492	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068165	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068954	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069998	0.95[ASN][1000 genomes]
rs10072003	0.82[ASN][1000 genomes]
rs10073182	0.82[ASN][1000 genomes]
rs10073184	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073604	0.82[ASN][1000 genomes]
rs10075123	0.93[ASN][1000 genomes]
rs10079049	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515223	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13163584	0.82[ASN][1000 genomes]
rs154056	0.85[EUR][1000 genomes]
rs154057	0.85[EUR][1000 genomes]
rs154061	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs154062	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154064	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154066	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17349336	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255979	0.83[EUR][1000 genomes]
rs255980	0.85[EUR][1000 genomes]
rs255981	0.85[EUR][1000 genomes]
rs26393	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs26394	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs26395	0.88[CEU][hapmap]
rs27688	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs27767	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs27768	0.90[CEU][hapmap]
rs3104738	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33810	0.84[EUR][1000 genomes]
rs33811	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs33813	0.84[EUR][1000 genomes]
rs36100739	0.80[ASN][1000 genomes]
rs395031	0.85[EUR][1000 genomes]
rs397826	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs421754	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs443272	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs448433	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs455516	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs457568	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs457819	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458134	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458663	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs458978	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs459730	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs460102	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs460363	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs460924	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs461059	1.00[CEU][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs462526	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs462828	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs462862	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs463261	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs463587	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs463961	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs464001	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs464008	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs464084	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs464158	0.93[CEU][hapmap]
rs464242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs464971	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs465847	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs466024	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs467144	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs56244253	0.80[ASN][1000 genomes]
rs686420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71630703	0.80[ASN][1000 genomes]
rs71630704	0.82[ASN][1000 genomes]
rs71630705	0.82[ASN][1000 genomes]
rs71630706	0.82[ASN][1000 genomes]
rs7349800	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73776337	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314133	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94595200-94598000	Weak transcription	Fetal Intestine Small	intestine
2	chr5:94596800-94598400	Enhancers	Primary hematopoietic stem cells	blood
3	chr5:94596800-94599000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:94596800-94599200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:94596800-94599600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:94597000-94598200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:94597000-94599400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:94597400-94597800	Weak transcription	Fetal Intestine Large	intestine
9	chr5:94597400-94598200	Enhancers	HepG2	liver
10	chr5:94597600-94598600	Weak transcription	HUVEC	blood vessel
11	chr5:94597600-94599000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links