Variant report

Variant	rs10072003
Chromosome Location	chr5:94528068-94528069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10044143	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10050382	0.83[ASN][1000 genomes]
rs10057040	0.82[ASN][1000 genomes]
rs10060946	0.82[ASN][1000 genomes]
rs10064420	0.82[ASN][1000 genomes]
rs10066492	0.82[ASN][1000 genomes]
rs10067492	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10068165	0.82[ASN][1000 genomes]
rs10068954	0.82[ASN][1000 genomes]
rs10069998	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10073182	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10073184	0.82[ASN][1000 genomes]
rs10073604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075123	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10077145	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10079049	0.87[ASN][1000 genomes]
rs10515223	0.82[ASN][1000 genomes]
rs13163584	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154062	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs154063	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs154064	0.82[ASN][1000 genomes]
rs17349336	0.82[ASN][1000 genomes]
rs3104738	0.82[ASN][1000 genomes]
rs35698400	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36100739	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs464242	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs466024	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs56244253	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs686420	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs71630703	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71630704	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71630705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71630706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7349800	0.87[ASN][1000 genomes]
rs73776337	0.82[ASN][1000 genomes]
rs9314133	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94527400-94528400	Enhancers	Fetal Brain Female	brain
2	chr5:94527800-94528200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:94528000-94528600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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