Variant report

Variant	rs255979
Chromosome Location	chr5:94653138-94653139
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10050382	0.82[EUR][1000 genomes]
rs10057040	0.85[EUR][1000 genomes]
rs10058623	0.82[EUR][1000 genomes]
rs10060946	0.83[EUR][1000 genomes]
rs10064420	0.81[EUR][1000 genomes]
rs10066492	0.85[EUR][1000 genomes]
rs10068165	0.83[EUR][1000 genomes]
rs10068954	0.85[EUR][1000 genomes]
rs10073184	0.83[EUR][1000 genomes]
rs10079049	0.81[EUR][1000 genomes]
rs10515223	0.84[EUR][1000 genomes]
rs154056	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154057	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154062	0.82[EUR][1000 genomes]
rs154063	0.83[EUR][1000 genomes]
rs154064	0.83[EUR][1000 genomes]
rs154066	0.81[EUR][1000 genomes]
rs17349336	0.83[EUR][1000 genomes]
rs181880	0.87[JPT][hapmap]
rs255961	0.81[ASN][1000 genomes]
rs255962	0.83[ASN][1000 genomes]
rs255963	0.84[ASN][1000 genomes]
rs255964	0.84[ASN][1000 genomes]
rs255965	0.83[ASN][1000 genomes]
rs255966	0.83[ASN][1000 genomes]
rs255967	0.83[ASN][1000 genomes]
rs255968	0.83[ASN][1000 genomes]
rs255980	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs255981	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255983	1.00[ASN][1000 genomes]
rs255984	1.00[ASN][1000 genomes]
rs255985	1.00[ASN][1000 genomes]
rs255986	1.00[ASN][1000 genomes]
rs255987	0.98[ASN][1000 genomes]
rs255988	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs26393	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26394	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26395	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27688	0.91[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs27767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3104738	0.84[EUR][1000 genomes]
rs33809	0.87[JPT][hapmap]
rs33810	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33811	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33813	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33892	0.86[JPT][hapmap]
rs395031	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396185	0.84[ASN][1000 genomes]
rs397826	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs403916	0.83[ASN][1000 genomes]
rs41121	0.87[JPT][hapmap]
rs414420	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs421754	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs443272	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs448433	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs455516	0.83[EUR][1000 genomes]
rs457568	0.89[CHB][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs457819	0.84[EUR][1000 genomes]
rs458134	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs458663	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs458978	0.84[EUR][1000 genomes]
rs459730	0.84[EUR][1000 genomes]
rs460102	0.84[EUR][1000 genomes]
rs460363	0.83[EUR][1000 genomes]
rs460924	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs461059	0.84[EUR][1000 genomes]
rs462526	0.84[EUR][1000 genomes]
rs462828	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs462862	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs463261	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs463587	0.80[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs463961	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs464001	0.80[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs464008	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs464084	0.85[EUR][1000 genomes]
rs464906	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs464971	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs465847	0.80[CHB][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs467144	0.84[EUR][1000 genomes]
rs669335	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7349800	0.81[EUR][1000 genomes]
rs73776337	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432752	chr5:94524244-94691044	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94652800-94653200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:94653000-94655400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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