Variant report

Variant	rs253708
Chromosome Location	chr5:94719281-94719282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94717048..94721313-chr5:94723242..94726311,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10061291	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1162861	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1363428	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1363429	0.83[EUR][1000 genomes]
rs181880	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1820041	0.85[ASN][1000 genomes]
rs185249	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1895248	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1895249	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2194089	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2432174	0.91[ASN][1000 genomes]
rs2434250	0.82[ASN][1000 genomes]
rs2434251	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs253712	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs253719	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2546097	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2546099	0.81[ASN][1000 genomes]
rs2546102	0.92[ASN][1000 genomes]
rs2546103	0.92[ASN][1000 genomes]
rs2546104	0.90[ASN][1000 genomes]
rs2560278	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs26393	0.86[JPT][hapmap]
rs26394	0.86[JPT][hapmap]
rs26395	0.86[JPT][hapmap]
rs2731834	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2731835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731837	0.92[ASN][1000 genomes]
rs27767	0.86[JPT][hapmap]
rs33365	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs33366	0.83[ASN][1000 genomes]
rs33367	0.83[ASN][1000 genomes]
rs33811	0.86[JPT][hapmap]
rs33892	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs33893	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41121	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94719200-94719600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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