Variant report

Variant	rs2546097
Chromosome Location	chr5:94728631-94728632
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10061291	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1162861	0.83[AMR][1000 genomes]
rs1363428	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs181880	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1820041	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs185249	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1895248	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1895249	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2194089	0.88[ASN][1000 genomes]
rs2348407	0.81[EUR][1000 genomes]
rs2432174	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2434251	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs253708	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs253712	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs253719	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2546099	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2546102	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2546103	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2546104	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2560278	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2731834	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2731835	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2731837	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33365	0.84[AFR][1000 genomes]
rs33892	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33893	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41121	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94728000-94729200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94728200-94728800	Enhancers	Dnd41	blood
3	chr5:94728200-94729000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:94728200-94729600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:94728200-94730400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:94728200-94730400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:94728400-94728800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:94728400-94728800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:94728400-94729200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:94728600-94728800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:94728600-94729000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:94728600-94729000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:94728600-94729000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr5:94728600-94729200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr5:94728600-94729600	Active TSS	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links