Variant report

Variant	rs11628676
Chromosome Location	chr14:65636600-65636601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65633532..65639308-chr14:65876570..65881222,11	MCF-7	breast:
2	chr14:65635781..65638807-chr14:65641309..65644199,4	MCF-7	breast:
3	chr14:65635954..65639205-chr14:65640166..65643842,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55723212	1.00[ASN][1000 genomes]
rs55836818	1.00[ASN][1000 genomes]
rs56012740	1.00[ASN][1000 genomes]
rs56328485	1.00[ASN][1000 genomes]
rs56354838	1.00[ASN][1000 genomes]
rs56381821	1.00[ASN][1000 genomes]
rs57581750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59414553	1.00[ASN][1000 genomes]
rs61596817	1.00[ASN][1000 genomes]
rs72728221	1.00[ASN][1000 genomes]
rs72728225	1.00[ASN][1000 genomes]
rs72728226	1.00[ASN][1000 genomes]
rs72728227	1.00[ASN][1000 genomes]
rs72728238	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1802727	chr14:65634797-65646536	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65624000-65637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65624000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:65625400-65637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:65626000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65626400-65637200	Weak transcription	Esophagus	oesophagus
6	chr14:65627200-65637000	Weak transcription	Primary B cells from cord blood	blood
7	chr14:65631800-65637200	Weak transcription	Fetal Intestine Large	intestine
8	chr14:65631800-65637200	Weak transcription	Fetal Intestine Small	intestine
9	chr14:65633800-65637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:65633800-65637600	Weak transcription	Spleen	Spleen
11	chr14:65634200-65637000	Weak transcription	Stomach Mucosa	stomach
12	chr14:65635600-65636600	Enhancers	HSMM	muscle
13	chr14:65635600-65637200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:65635600-65637200	Enhancers	Primary B cells from peripheral blood	blood
15	chr14:65635600-65637200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:65635600-65637200	Enhancers	NH-A	brain
17	chr14:65635600-65637200	Enhancers	NHDF-Ad	bronchial
18	chr14:65635600-65637200	Enhancers	Osteobl	bone
19	chr14:65635800-65636600	Enhancers	HMEC	breast
20	chr14:65635800-65637200	Enhancers	NHLF	lung
21	chr14:65636000-65637000	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:65636000-65637200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr14:65636000-65637200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr14:65636000-65637200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr14:65636000-65637400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:65636200-65637200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:65636200-65637200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:65636200-65637200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:65636200-65637200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:65636200-65637200	Weak transcription	HSMMtube	muscle
31	chr14:65636200-65637400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:65636200-65637400	Enhancers	Dnd41	blood
33	chr14:65636400-65636600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:65636400-65636800	Weak transcription	Brain Anterior Caudate	brain
35	chr14:65636400-65636800	Weak transcription	Brain Substantia Nigra	brain
36	chr14:65636400-65637000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr14:65636400-65637000	Weak transcription	Brain Angular Gyrus	brain
38	chr14:65636400-65637000	Enhancers	GM12878-XiMat	blood
39	chr14:65636400-65637200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:65636400-65637200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr14:65636400-65637200	Enhancers	Brain Cingulate Gyrus	brain
42	chr14:65636400-65637200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:65636400-65637600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:65636600-65637000	Weak transcription	HMEC	breast
45	chr14:65636600-65637000	Weak transcription	HSMM	muscle
46	chr14:65636600-65637200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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