Variant report

Variant	rs11634087
Chromosome Location	chr15:39682798-39682799
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39679668..39681537-chr15:39681975..39684409,2	K562	blood:
2	chr15:39680767..39685014-chr15:39686318..39690917,5	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11630143	0.95[EUR][1000 genomes]
rs11630296	0.95[EUR][1000 genomes]
rs11631131	0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11631290	0.95[EUR][1000 genomes]
rs11631466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631836	0.95[EUR][1000 genomes]
rs11634167	0.95[EUR][1000 genomes]
rs11634541	0.95[EUR][1000 genomes]
rs11635229	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11635586	0.95[EUR][1000 genomes]
rs11636438	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637421	0.90[EUR][1000 genomes]
rs16952114	0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs16952143	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs16952145	0.84[CHD][hapmap];1.00[JPT][hapmap]
rs16952153	1.00[JPT][hapmap]
rs16969092	0.86[EUR][1000 genomes]
rs16969119	0.81[EUR][1000 genomes]
rs17702778	0.81[EUR][1000 genomes]
rs1973175	1.00[JPT][hapmap]
rs3960597	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3973348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3973349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3973365	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603529	0.86[EUR][1000 genomes]
rs4924364	0.81[EUR][1000 genomes]
rs55848083	1.00[EUR][1000 genomes]
rs56313937	0.95[EUR][1000 genomes]
rs58280064	0.95[EUR][1000 genomes]
rs60313653	0.95[EUR][1000 genomes]
rs60623717	0.90[EUR][1000 genomes]
rs60664658	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61545963	0.90[EUR][1000 genomes]
rs7165434	0.90[EUR][1000 genomes]
rs7166266	0.90[EUR][1000 genomes]
rs7171447	0.90[EUR][1000 genomes]
rs7171799	0.90[EUR][1000 genomes]
rs7174276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs73393456	0.95[EUR][1000 genomes]
rs73393472	0.95[EUR][1000 genomes]
rs73399395	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39677200-39684400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:39680600-39685000	Weak transcription	A549	lung
3	chr15:39681000-39682800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr15:39681000-39684800	Weak transcription	Fetal Intestine Large	intestine
5	chr15:39681000-39684800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr15:39681000-39685400	Weak transcription	HepG2	liver
7	chr15:39681000-39688800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:39681000-39691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:39681200-39683200	Weak transcription	Fetal Heart	heart
10	chr15:39682400-39687800	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links