Variant report

Variant	rs11635229
Chromosome Location	chr15:39696151-39696152
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39694348..39696610-chr15:39874084..39875864,2	MCF-7	breast:
2	chr15:39693251..39695685-chr15:39695839..39698387,3	K562	blood:
3	chr15:39693251..39695685-chr15:39695839..39697787,2	K562	blood:
4	chr15:39693671..39697771-chr15:39871894..39873705,4	MCF-7	breast:
5	chr15:39471065..39473001-chr15:39694678..39697568,2	MCF-7	breast:
6	chr15:39694167..39696674-chr15:39698967..39702842,3	K562	blood:
7	chr15:39687930..39690603-chr15:39694421..39696812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11630143	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630296	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631131	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11631290	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631466	1.00[EUR][1000 genomes]
rs11631836	0.95[EUR][1000 genomes]
rs11634087	1.00[EUR][1000 genomes]
rs11634167	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11634541	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11634743	0.81[ASN][1000 genomes]
rs11635586	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11636438	1.00[EUR][1000 genomes]
rs11637421	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16952114	0.89[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16952143	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16952145	1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16952153	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16969087	0.91[CHD][hapmap];1.00[GIH][hapmap]
rs16969090	0.81[ASN][1000 genomes]
rs16969092	0.86[EUR][1000 genomes]
rs16969119	0.81[EUR][1000 genomes]
rs17702778	0.81[EUR][1000 genomes]
rs1973175	0.81[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3960597	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs3973348	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs3973349	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs3973365	1.00[EUR][1000 genomes]
rs4603529	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4924364	0.81[EUR][1000 genomes]
rs55848083	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56313937	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56329829	0.81[ASN][1000 genomes]
rs58157051	0.81[ASN][1000 genomes]
rs58280064	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60266259	0.81[ASN][1000 genomes]
rs60313653	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60420802	0.81[ASN][1000 genomes]
rs60623717	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60664658	1.00[EUR][1000 genomes]
rs61545963	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7165434	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7166266	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7171447	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7171799	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73393456	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73393472	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73399395	0.81[EUR][1000 genomes]
rs74010136	0.81[ASN][1000 genomes]
rs8042191	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39690400-39696600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:39691400-39697000	Weak transcription	Left Ventricle	heart
3	chr15:39695200-39698000	Enhancers	Osteobl	bone
4	chr15:39695200-39699000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:39695400-39697200	Enhancers	Fetal Lung	lung
6	chr15:39695400-39697600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr15:39695400-39698000	Enhancers	Hela-S3	cervix
8	chr15:39695400-39698000	Enhancers	K562	blood
9	chr15:39695400-39698800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:39695400-39699600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:39695400-39700400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:39695400-39700400	Enhancers	NHDF-Ad	bronchial
13	chr15:39695600-39696200	Enhancers	Duodenum Mucosa	Duodenum
14	chr15:39695600-39696200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:39695600-39696400	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr15:39695600-39696400	Enhancers	Fetal Stomach	stomach
17	chr15:39695600-39697400	Enhancers	HUVEC	blood vessel
18	chr15:39695600-39697600	Enhancers	HSMM	muscle
19	chr15:39695600-39697600	Enhancers	NH-A	brain
20	chr15:39695600-39698000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:39695600-39698000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:39695600-39698200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:39695600-39698600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:39695600-39698800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:39695600-39699000	Enhancers	HMEC	breast
26	chr15:39695600-39700000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:39695600-39700000	Enhancers	NHLF	lung
28	chr15:39695800-39696200	Enhancers	Fetal Heart	heart
29	chr15:39695800-39696400	Enhancers	HepG2	liver
30	chr15:39695800-39696600	Enhancers	Fetal Kidney	kidney
31	chr15:39695800-39697600	Enhancers	HSMMtube	muscle
32	chr15:39695800-39698000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:39695800-39698600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr15:39695800-39699000	Enhancers	NHEK	skin
35	chr15:39696000-39696200	Enhancers	Lung	lung
36	chr15:39696000-39697000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr15:39696000-39697400	Enhancers	Right Atrium	heart
38	chr15:39696000-39697400	Flanking Active TSS	A549	lung
39	chr15:39696000-39697600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:39696000-39697600	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:39696000-39697600	Enhancers	Placenta	Placenta
42	chr15:39696000-39698000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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