Variant report

Variant	rs11636438
Chromosome Location	chr15:39689667-39689668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:39688689..39690644-chr15:39690686..39693111,2	MCF-7	breast:
2	chr15:39687930..39690603-chr15:39694421..39696812,2	MCF-7	breast:
3	chr15:39689591..39691834-chr15:39708077..39710104,2	K562	blood:
4	chr15:39684874..39687815-chr15:39688159..39690874,2	MCF-7	breast:
5	chr15:39679859..39682267-chr15:39688446..39690917,2	K562	blood:
6	chr15:39683407..39685977-chr15:39689632..39691631,2	MCF-7	breast:
7	chr15:39680767..39685014-chr15:39686318..39690917,5	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSIP1-8	chr15:39689634-39689690	l_1148_chr15:39688871-39700983_testes

No data

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11630143	0.95[EUR][1000 genomes]
rs11630296	0.95[EUR][1000 genomes]
rs11631131	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11631290	0.95[EUR][1000 genomes]
rs11631466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631836	0.95[EUR][1000 genomes]
rs11634087	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634167	0.95[EUR][1000 genomes]
rs11634541	0.95[EUR][1000 genomes]
rs11635229	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11635586	0.95[EUR][1000 genomes]
rs11637421	0.90[EUR][1000 genomes]
rs16952114	1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs16952143	1.00[JPT][hapmap]
rs16952145	1.00[JPT][hapmap]
rs16952153	1.00[JPT][hapmap]
rs16969092	0.86[EUR][1000 genomes]
rs16969119	0.81[EUR][1000 genomes]
rs17702778	0.81[EUR][1000 genomes]
rs1973175	1.00[JPT][hapmap]
rs3960597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3973348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3973349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3973365	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603529	0.86[EUR][1000 genomes]
rs4924364	0.81[EUR][1000 genomes]
rs55848083	1.00[EUR][1000 genomes]
rs56313937	0.95[EUR][1000 genomes]
rs58280064	0.95[EUR][1000 genomes]
rs60313653	0.95[EUR][1000 genomes]
rs60623717	0.90[EUR][1000 genomes]
rs60664658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61545963	0.90[EUR][1000 genomes]
rs7165434	0.90[EUR][1000 genomes]
rs7166266	0.90[EUR][1000 genomes]
rs7171447	0.90[EUR][1000 genomes]
rs7171799	0.90[EUR][1000 genomes]
rs7174276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs73393456	0.95[EUR][1000 genomes]
rs73393472	0.95[EUR][1000 genomes]
rs73399395	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39681000-39691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:39685000-39693200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:39686400-39689800	Weak transcription	Thymus	Thymus
4	chr15:39686400-39690200	Weak transcription	Fetal Thymus	thymus
5	chr15:39686600-39692000	Weak transcription	Osteobl	bone
6	chr15:39687000-39692000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:39687200-39690400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:39687200-39690600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:39688400-39690600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:39688800-39690200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:39688800-39690400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:39688800-39690400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:39688800-39690600	Enhancers	K562	blood
14	chr15:39689600-39690600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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