Variant report

Variant	rs60266259
Chromosome Location	chr15:39770315-39770316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10520131	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630143	0.86[ASN][1000 genomes]
rs11630296	0.86[ASN][1000 genomes]
rs11631131	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631290	0.86[ASN][1000 genomes]
rs11634541	0.86[ASN][1000 genomes]
rs11634743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635229	0.81[ASN][1000 genomes]
rs11635586	0.86[ASN][1000 genomes]
rs11637421	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952114	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952143	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952145	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969090	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969092	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16969119	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17702778	0.91[ASN][1000 genomes]
rs1973175	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4603529	1.00[ASN][1000 genomes]
rs4924364	0.88[ASN][1000 genomes]
rs55848083	0.86[ASN][1000 genomes]
rs56313937	0.86[ASN][1000 genomes]
rs56329829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58157051	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58280064	0.86[ASN][1000 genomes]
rs60313653	0.86[ASN][1000 genomes]
rs60420802	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623717	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61545963	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165434	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166266	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171447	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171799	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174276	0.86[ASN][1000 genomes]
rs73393456	0.86[ASN][1000 genomes]
rs73393472	0.86[ASN][1000 genomes]
rs73399395	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74010136	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042191	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
2	chr15:39767000-39772200	Weak transcription	Spleen	Spleen
3	chr15:39767200-39771400	Weak transcription	Fetal Stomach	stomach
4	chr15:39767200-39772200	Weak transcription	NHDF-Ad	bronchial
5	chr15:39767200-39773200	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:39767800-39770800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:39767800-39770800	Weak transcription	Pancreas	Pancrea
8	chr15:39769400-39775600	Weak transcription	Primary monocytes fromperipheralblood	blood

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