Variant report

Variant	rs8042191
Chromosome Location	chr15:39765961-39765962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10520131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11630143	0.86[ASN][1000 genomes]
rs11630296	0.86[ASN][1000 genomes]
rs11631131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631290	0.86[ASN][1000 genomes]
rs11631836	1.00[CEU][hapmap]
rs11634541	0.86[ASN][1000 genomes]
rs11634743	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635229	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11635586	0.86[ASN][1000 genomes]
rs11637421	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16969090	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969092	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16969119	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17702778	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1973175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3960597	0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3973348	0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3973349	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs4603529	1.00[ASN][1000 genomes]
rs4924364	0.88[ASN][1000 genomes]
rs55848083	0.86[ASN][1000 genomes]
rs56313937	0.86[ASN][1000 genomes]
rs56329829	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58157051	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58280064	0.86[ASN][1000 genomes]
rs60266259	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60313653	0.86[ASN][1000 genomes]
rs60420802	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60623717	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61545963	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165434	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166266	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171447	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171799	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7174276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs73393456	0.86[ASN][1000 genomes]
rs73393472	0.86[ASN][1000 genomes]
rs73399395	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74010136	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39759800-39766800	Weak transcription	Lung	lung
2	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
3	chr15:39761400-39766200	Weak transcription	HUVEC	blood vessel
4	chr15:39762600-39767200	Enhancers	Colon Smooth Muscle	Colon
5	chr15:39762800-39767200	Enhancers	Fetal Stomach	stomach
6	chr15:39763000-39767800	Enhancers	Fetal Lung	lung
7	chr15:39763200-39767800	Enhancers	Fetal Muscle Leg	muscle
8	chr15:39763400-39767000	Enhancers	Rectal Smooth Muscle	rectum
9	chr15:39763400-39767200	Enhancers	NHDF-Ad	bronchial
10	chr15:39763800-39766600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:39764000-39767000	Enhancers	NHLF	lung
12	chr15:39764400-39767000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:39764600-39766000	Enhancers	Osteobl	bone
14	chr15:39764600-39767000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:39764600-39767000	Enhancers	Adipose Nuclei	Adipose
16	chr15:39764600-39767000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr15:39764600-39767200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:39764800-39766000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:39764800-39767200	Enhancers	HSMMtube	muscle
20	chr15:39765000-39766000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:39765000-39766000	Weak transcription	Fetal Kidney	kidney
22	chr15:39765200-39766200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr15:39765200-39766400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:39765200-39767200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr15:39765200-39767200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr15:39765200-39767800	Enhancers	Pancreas	Pancrea
27	chr15:39765200-39767800	Enhancers	HSMM	muscle
28	chr15:39765400-39766200	Enhancers	Primary hematopoietic stem cells	blood
29	chr15:39765400-39766400	Enhancers	Fetal Intestine Small	intestine
30	chr15:39765600-39766600	Weak transcription	NH-A	brain
31	chr15:39765600-39767800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:39765600-39767800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:39765800-39766000	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr15:39765800-39766200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:39765800-39766800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:39765800-39766800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:39765800-39767000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links