Variant report

Variant	rs10520131
Chromosome Location	chr15:39778480-39778481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11630143	0.82[ASN][1000 genomes]
rs11630296	0.82[ASN][1000 genomes]
rs11631131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631290	0.82[ASN][1000 genomes]
rs11631836	1.00[CEU][hapmap]
rs11634541	0.82[ASN][1000 genomes]
rs11634743	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11635229	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11635586	0.82[ASN][1000 genomes]
rs11637421	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16952153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16969087	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16969090	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16969092	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969119	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17702778	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1973175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3960597	0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3973348	0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3973349	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs4603529	0.95[ASN][1000 genomes]
rs4924364	0.92[ASN][1000 genomes]
rs55848083	0.82[ASN][1000 genomes]
rs56313937	0.82[ASN][1000 genomes]
rs56329829	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58157051	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58280064	0.82[ASN][1000 genomes]
rs60266259	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60313653	0.82[ASN][1000 genomes]
rs60420802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60623717	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61545963	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7165434	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7166266	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7171447	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7171799	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7174276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs73393456	0.82[ASN][1000 genomes]
rs73393472	0.82[ASN][1000 genomes]
rs73399395	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74010136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8042191	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39777800-39783000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:39778000-39778600	Weak transcription	Fetal Kidney	kidney
3	chr15:39778000-39783000	Enhancers	Fetal Lung	lung
4	chr15:39778200-39780200	Enhancers	Rectal Smooth Muscle	rectum
5	chr15:39778200-39780400	Enhancers	Colon Smooth Muscle	Colon
6	chr15:39778400-39778800	Enhancers	HSMMtube	muscle
7	chr15:39778400-39780200	Enhancers	Stomach Smooth Muscle	stomach
8	chr15:39778400-39781600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:39778400-39785200	Enhancers	Fetal Stomach	stomach

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