Variant report

Variant	rs11635102
Chromosome Location	chr15:51260875-51260876
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51259926..51261571-chr15:51483708..51485228,2	MCF-7	breast:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10744956	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs11070824	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11070829	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11070835	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1147128	0.96[ASN][1000 genomes]
rs1147129	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1147130	0.96[ASN][1000 genomes]
rs1147131	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1147133	0.96[ASN][1000 genomes]
rs1147135	0.96[ASN][1000 genomes]
rs1147136	0.96[ASN][1000 genomes]
rs1147139	0.94[ASN][1000 genomes]
rs11632971	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11635015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11857810	0.81[JPT][hapmap]
rs12438343	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12440387	0.87[CHB][hapmap]
rs12441714	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12595034	0.96[ASN][1000 genomes]
rs12708425	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1276854	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs12898208	0.96[ASN][1000 genomes]
rs12898530	0.96[ASN][1000 genomes]
rs12899459	0.83[ASN][1000 genomes]
rs12902894	0.88[ASN][1000 genomes]
rs12902899	0.88[ASN][1000 genomes]
rs12904125	0.94[ASN][1000 genomes]
rs12904382	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12905611	0.94[ASN][1000 genomes]
rs12906866	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs12908516	0.89[ASN][1000 genomes]
rs12909519	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12912295	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12916407	0.95[ASN][1000 genomes]
rs1371058	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1472946	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1509423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1550336	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1550340	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17703090	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2118785	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2127366	0.96[ASN][1000 genomes]
rs2127367	0.97[ASN][1000 genomes]
rs2127368	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2170011	0.97[ASN][1000 genomes]
rs2249535	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs2306331	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2306332	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2414078	0.96[ASN][1000 genomes]
rs2414079	0.96[ASN][1000 genomes]
rs2414080	0.92[ASN][1000 genomes]
rs2414081	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2614763	0.81[ASN][1000 genomes]
rs2614776	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2614779	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2614780	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2614781	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[ASN][1000 genomes]
rs2614782	0.96[ASN][1000 genomes]
rs2614784	0.96[ASN][1000 genomes]
rs2614789	0.96[ASN][1000 genomes]
rs2614790	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs2614791	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs2614792	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2614794	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[ASN][1000 genomes]
rs2619686	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[ASN][1000 genomes]
rs2619687	0.96[ASN][1000 genomes]
rs2619688	0.96[ASN][1000 genomes]
rs2619691	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2619693	0.94[ASN][1000 genomes]
rs2619694	0.94[ASN][1000 genomes]
rs2663533	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2663534	0.87[ASN][1000 genomes]
rs2663535	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2663537	0.95[ASN][1000 genomes]
rs2663538	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2663541	0.96[ASN][1000 genomes]
rs2663543	0.96[ASN][1000 genomes]
rs2663544	0.96[ASN][1000 genomes]
rs2663545	0.96[ASN][1000 genomes]
rs2663546	0.96[ASN][1000 genomes]
rs2663548	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs2663551	0.81[ASN][1000 genomes]
rs2663553	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2663554	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2663555	0.96[ASN][1000 genomes]
rs2663556	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[ASN][1000 genomes]
rs28702388	0.81[ASN][1000 genomes]
rs3743045	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784301	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs3784302	0.87[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3784303	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4438254	0.96[ASN][1000 genomes]
rs4444282	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4534781	0.95[ASN][1000 genomes]
rs4775910	0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs62018857	0.80[ASN][1000 genomes]
rs6493469	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6493471	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6493472	0.81[ASN][1000 genomes]
rs6493473	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493476	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs714784	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7162209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7168385	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7168846	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7169888	0.97[ASN][1000 genomes]
rs7170311	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170365	0.96[ASN][1000 genomes]
rs7170675	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7171085	0.97[ASN][1000 genomes]
rs7177267	0.97[ASN][1000 genomes]
rs7180258	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7181051	0.96[ASN][1000 genomes]
rs7181201	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7181997	0.96[ASN][1000 genomes]
rs7182957	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7184026	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7494977	0.94[ASN][1000 genomes]
rs8024428	0.97[ASN][1000 genomes]
rs8026318	0.96[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8029155	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8029369	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs8030124	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8030214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8031702	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[ASN][1000 genomes]
rs8033934	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8034236	0.87[ASN][1000 genomes]
rs8034576	0.89[ASN][1000 genomes]
rs8035358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8041824	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv569403	chr15:51191421-51304373	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1038778	chr15:51196641-51356728	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv904214	chr15:51204364-51535192	Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv569404	chr15:51234595-51294995	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51201800-51271600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:51210600-51298400	Weak transcription	Stomach Mucosa	stomach
3	chr15:51235200-51263800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:51243600-51261400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:51243800-51283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:51250400-51264800	Weak transcription	NHEK	skin
7	chr15:51251600-51261200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:51252200-51261200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:51252200-51262400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:51252200-51263400	Weak transcription	NHLF	lung
11	chr15:51252400-51283800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:51253400-51265600	Weak transcription	HMEC	breast
13	chr15:51253600-51261000	Weak transcription	Fetal Thymus	thymus
14	chr15:51253600-51261400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:51253600-51262200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:51253800-51262200	Weak transcription	NHDF-Ad	bronchial
17	chr15:51253800-51262400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:51253800-51262400	Weak transcription	NH-A	brain
19	chr15:51254000-51261200	Weak transcription	Fetal Kidney	kidney
20	chr15:51254600-51261000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:51254600-51261400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr15:51255600-51261200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:51255800-51261200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:51255800-51263200	Weak transcription	HUVEC	blood vessel
25	chr15:51256800-51261200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:51257000-51261000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr15:51257200-51262800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:51257400-51261400	Weak transcription	Dnd41	blood
29	chr15:51257400-51262400	Weak transcription	Colon Smooth Muscle	Colon
30	chr15:51257600-51261200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:51257600-51261200	Weak transcription	HSMM	muscle
32	chr15:51257600-51261400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:51257600-51261400	Weak transcription	Fetal Lung	lung
34	chr15:51257600-51261400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:51257600-51262000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:51257600-51262000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:51257600-51262200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr15:51257600-51262200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:51257600-51264800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:51257600-51264800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:51257600-51272800	Weak transcription	Pancreas	Pancrea
42	chr15:51257800-51261200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:51257800-51261200	Weak transcription	Adipose Nuclei	Adipose
44	chr15:51257800-51261200	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:51257800-51261200	Weak transcription	Colonic Mucosa	Colon
46	chr15:51257800-51261200	Weak transcription	Spleen	Spleen
47	chr15:51257800-51261400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:51257800-51261400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:51257800-51261400	Weak transcription	Aorta	Aorta
50	chr15:51257800-51261400	Weak transcription	K562	blood

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