Variant report

Variant	rs4534781
Chromosome Location	chr15:51267361-51267362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51265611..51268548-chr15:51273285..51275187,2	MCF-7	breast:

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10744956	0.88[ASN][1000 genomes]
rs11070824	0.86[ASN][1000 genomes]
rs11070829	0.87[ASN][1000 genomes]
rs1147128	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147129	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147130	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147131	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147133	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147135	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147136	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147139	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11632971	0.94[ASN][1000 genomes]
rs11635015	0.94[ASN][1000 genomes]
rs11635102	0.95[ASN][1000 genomes]
rs12438343	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12441714	0.94[ASN][1000 genomes]
rs12595034	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1276854	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12898208	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12898530	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12899459	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12902894	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12902899	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12904125	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12904382	0.89[ASN][1000 genomes]
rs12905611	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12906866	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12908516	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12912295	0.93[ASN][1000 genomes]
rs12916407	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1371058	0.87[ASN][1000 genomes]
rs1472946	0.86[ASN][1000 genomes]
rs1509423	0.94[ASN][1000 genomes]
rs1550336	0.83[ASN][1000 genomes]
rs1550340	0.87[ASN][1000 genomes]
rs17703090	0.86[ASN][1000 genomes]
rs2118785	0.83[ASN][1000 genomes]
rs2127366	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2127367	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2127368	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2170011	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2249535	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306331	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2306332	0.94[ASN][1000 genomes]
rs2414078	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414079	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414080	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414081	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2614763	0.81[ASN][1000 genomes]
rs2614776	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614779	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614780	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614781	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614782	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614784	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614789	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614790	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614791	0.86[ASN][1000 genomes]
rs2614792	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2614794	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619686	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619687	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619688	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619691	0.82[ASN][1000 genomes]
rs2619693	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619694	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2663533	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663534	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2663535	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663537	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663538	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663541	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663543	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663544	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663545	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663546	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663550	0.80[ASN][1000 genomes]
rs2663551	0.81[ASN][1000 genomes]
rs2663553	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663554	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663555	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663556	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28702388	0.83[ASN][1000 genomes]
rs3743045	0.89[ASN][1000 genomes]
rs3784301	0.91[ASN][1000 genomes]
rs3784302	0.91[ASN][1000 genomes]
rs3784303	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4438254	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4444282	0.88[ASN][1000 genomes]
rs4775910	0.86[ASN][1000 genomes]
rs62018857	0.81[ASN][1000 genomes]
rs6493469	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493471	0.82[ASN][1000 genomes]
rs6493473	0.83[ASN][1000 genomes]
rs6493476	0.83[ASN][1000 genomes]
rs714784	0.89[ASN][1000 genomes]
rs7162209	0.94[ASN][1000 genomes]
rs7168385	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7168846	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7169888	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7170311	0.93[ASN][1000 genomes]
rs7170365	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170675	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7171085	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7177267	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7180258	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7181051	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7181201	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7181997	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7182957	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7184026	0.89[ASN][1000 genomes]
rs7494977	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8024428	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8026318	0.83[ASN][1000 genomes]
rs8029155	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029369	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030124	0.85[ASN][1000 genomes]
rs8030214	0.94[ASN][1000 genomes]
rs8031702	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8033934	0.87[ASN][1000 genomes]
rs8034236	0.90[ASN][1000 genomes]
rs8034576	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8035358	0.94[ASN][1000 genomes]
rs8041824	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
5	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv569403	chr15:51191421-51304373	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1038778	chr15:51196641-51356728	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv904214	chr15:51204364-51535192	Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv569404	chr15:51234595-51294995	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1049644	chr15:51265447-51560445	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51201800-51271600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:51210600-51298400	Weak transcription	Stomach Mucosa	stomach
3	chr15:51243800-51283000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:51252400-51283800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:51257600-51272800	Weak transcription	Pancreas	Pancrea
6	chr15:51260600-51268400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:51260800-51268000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:51261000-51269200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:51261200-51268200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr15:51261600-51272800	Weak transcription	Colonic Mucosa	Colon
11	chr15:51261600-51295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:51261600-51298200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:51263000-51304800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:51263200-51276000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:51263400-51281000	Weak transcription	Fetal Heart	heart
16	chr15:51263600-51267400	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr15:51263600-51268000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:51263600-51287200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:51263600-51293600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:51263600-51296400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:51263600-51297800	Weak transcription	NHLF	lung
22	chr15:51263600-51299200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:51263600-51300200	Weak transcription	Small Intestine	intestine
24	chr15:51263600-51301200	Weak transcription	HepG2	liver
25	chr15:51263600-51303000	Weak transcription	HUVEC	blood vessel
26	chr15:51263800-51269400	Weak transcription	Psoas Muscle	Psoas
27	chr15:51263800-51272600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr15:51263800-51275400	Weak transcription	NH-A	brain
29	chr15:51263800-51296200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:51263800-51296600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:51263800-51300400	Weak transcription	Right Ventricle	heart
32	chr15:51264400-51267400	Strong transcription	Liver	Liver
33	chr15:51264400-51267800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:51264400-51269400	Weak transcription	Colon Smooth Muscle	Colon
35	chr15:51264400-51271000	Weak transcription	Osteobl	bone
36	chr15:51264400-51283200	Weak transcription	Brain Substantia Nigra	brain
37	chr15:51264400-51294200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:51264600-51267600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:51264600-51268000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:51264600-51296600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:51264800-51267600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr15:51265000-51267600	Strong transcription	Fetal Stomach	stomach
43	chr15:51265000-51267800	Strong transcription	Adipose Nuclei	Adipose
44	chr15:51265000-51270800	Weak transcription	Brain Anterior Caudate	brain
45	chr15:51265000-51272800	Weak transcription	Thymus	Thymus
46	chr15:51265000-51275800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:51265200-51267600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr15:51265200-51267800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:51265200-51268000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:51265200-51268200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links