Variant report

Variant	rs2663550
Chromosome Location	chr15:51143378-51143379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51142581..51145148-chr15:51146031..51147554,2	MCF-7	breast:
2	chr15:51143308..51145853-chr15:51149102..51150637,2	MCF-7	breast:
3	chr15:51117817..51119915-chr15:51142986..51144637,2	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1147128	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147129	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147130	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1147131	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147133	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147135	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147136	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1147139	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12438343	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12595034	0.81[ASN][1000 genomes]
rs12595754	0.83[ASN][1000 genomes]
rs1276854	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12898208	0.81[ASN][1000 genomes]
rs12898530	0.81[ASN][1000 genomes]
rs12904125	0.81[EUR][1000 genomes]
rs12905611	0.81[EUR][1000 genomes]
rs12908516	0.87[EUR][1000 genomes]
rs12909505	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12915330	0.81[ASN][1000 genomes]
rs12916407	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2127366	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2127367	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2127368	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2170011	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2249535	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2306331	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414058	0.83[ASN][1000 genomes]
rs2414078	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414079	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414081	0.81[ASN][1000 genomes]
rs2614763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2614776	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2614779	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2614780	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2614781	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2614782	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2614784	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2614789	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2614790	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2614792	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2614794	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2619686	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2619687	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2619688	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2619693	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2619694	0.87[EUR][1000 genomes]
rs2663533	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663534	0.85[EUR][1000 genomes]
rs2663535	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663537	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663538	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663541	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663543	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663544	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663545	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663546	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2663548	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2663551	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2663553	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2663554	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2663555	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2663556	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28621809	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3784303	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4438254	0.81[ASN][1000 genomes]
rs4534781	0.80[ASN][1000 genomes]
rs4775904	0.92[ASN][1000 genomes]
rs60454952	0.80[ASN][1000 genomes]
rs62018857	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6493456	0.83[ASN][1000 genomes]
rs6493457	0.81[ASN][1000 genomes]
rs6493469	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7168385	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7168846	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7169888	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7170365	0.81[ASN][1000 genomes]
rs7170675	0.81[ASN][1000 genomes]
rs7171085	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7177267	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7181051	0.81[ASN][1000 genomes]
rs7181997	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7183434	0.82[ASN][1000 genomes]
rs8024428	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8029110	0.91[ASN][1000 genomes]
rs8029155	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8029369	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030680	0.92[ASN][1000 genomes]
rs8031702	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8033776	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
14	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
15	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
16	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
17	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
18	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51141000-51146400	Weak transcription	HepG2	liver
2	chr15:51143000-51143600	Enhancers	Placenta	Placenta

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