Variant report

Variant	rs11639767
Chromosome Location	chr16:79881644-79881645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79868315..79871347-chr16:79879608..79882183,3	K562	blood:
2	chr16:79876074..79877931-chr16:79879588..79883797,3	K562	blood:
3	chr16:79877945..79879794-chr16:79880017..79882349,2	MCF-7	breast:
4	chr16:79873710..79876055-chr16:79879672..79882063,2	K562	blood:
5	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
6	chr16:79879070..79882404-chr16:79882481..79885760,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11641047	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11644568	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11644893	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11646016	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11649677	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11649685	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16951485	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16951509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16951514	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28401424	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28550306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28566844	0.83[ASN][1000 genomes]
rs28678066	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28682553	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28694329	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4372703	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4410095	0.85[EUR][1000 genomes]
rs7184396	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7206616	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74037860	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74037863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74037864	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921449	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9933396	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79876000-79882400	Weak transcription	Fetal Lung	lung
2	chr16:79879200-79882400	Weak transcription	Fetal Stomach	stomach
3	chr16:79879600-79885200	Enhancers	Thymus	Thymus
4	chr16:79879800-79884600	Enhancers	Fetal Thymus	thymus
5	chr16:79880000-79883400	Weak transcription	Primary T cells from cord blood	blood
6	chr16:79880200-79881800	Enhancers	K562	blood
7	chr16:79880400-79882600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr16:79880600-79881800	Enhancers	Esophagus	oesophagus
9	chr16:79880600-79884800	Enhancers	NHEK	skin
10	chr16:79880800-79882200	Enhancers	Duodenum Mucosa	Duodenum
11	chr16:79880800-79882800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr16:79880800-79883600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr16:79880800-79885200	Enhancers	Colon Smooth Muscle	Colon
14	chr16:79881400-79882800	Weak transcription	Fetal Intestine Large	intestine
15	chr16:79881400-79882800	Weak transcription	Placenta	Placenta
16	chr16:79881400-79883200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:79881600-79881800	Enhancers	Gastric	stomach
18	chr16:79881600-79882600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr16:79881600-79883000	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links