Variant report

Variant	rs9921449
Chromosome Location	chr16:79872686-79872687
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
2	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11639767	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11641047	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11644568	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11644893	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11646016	0.94[EUR][1000 genomes]
rs11649677	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11649685	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16951485	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16951509	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16951514	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28401424	0.94[EUR][1000 genomes]
rs28550306	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28678066	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28682553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28694329	0.94[EUR][1000 genomes]
rs4290483	1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4307960	0.82[CHB][hapmap];0.95[CHD][hapmap]
rs4372703	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs4465617	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7184396	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7195432	0.88[CHB][hapmap]
rs7206616	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74037860	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74037863	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74037864	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74039248	0.82[ASN][1000 genomes]
rs9921272	0.96[ASN][1000 genomes]
rs9933396	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79869800-79873600	Weak transcription	Placenta	Placenta
3	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
4	chr16:79870600-79873000	Weak transcription	Adipose Nuclei	Adipose
5	chr16:79871600-79874400	Enhancers	Fetal Muscle Leg	muscle
6	chr16:79872000-79873000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr16:79872000-79873000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:79872000-79873000	Active TSS	Stomach Smooth Muscle	stomach
9	chr16:79872200-79872800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:79872200-79872800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:79872200-79872800	Active TSS	Brain Germinal Matrix	brain
12	chr16:79872200-79872800	Active TSS	Brain Substantia Nigra	brain
13	chr16:79872200-79872800	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr16:79872200-79872800	Active TSS	NHLF	lung
15	chr16:79872200-79873000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr16:79872200-79873000	Active TSS	NHDF-Ad	bronchial
17	chr16:79872400-79872800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
18	chr16:79872400-79872800	Active TSS	Ovary	ovary
19	chr16:79872400-79873000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
20	chr16:79872400-79873000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
21	chr16:79872400-79873000	Enhancers	HepG2	liver
22	chr16:79872400-79873400	Enhancers	Fetal Brain Female	brain
23	chr16:79872400-79874000	Enhancers	Fetal Intestine Small	intestine
24	chr16:79872400-79874800	Weak transcription	K562	blood
25	chr16:79872600-79872800	Active TSS	Brain Hippocampus Middle	brain
26	chr16:79872600-79872800	Flanking Active TSS	Fetal Stomach	stomach
27	chr16:79872600-79873000	Flanking Active TSS	Fetal Lung	lung
28	chr16:79872600-79873000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr16:79872600-79873200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr16:79872600-79873200	Bivalent Enhancer	Brain Anterior Caudate	brain
31	chr16:79872600-79873400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr16:79872600-79874400	Enhancers	Fetal Heart	heart
33	chr16:79872600-79875000	Enhancers	Rectal Smooth Muscle	rectum

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