Variant report

Variant	rs7206616
Chromosome Location	chr16:79876914-79876915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:79876074..79877931-chr16:79879588..79883797,3	K562	blood:
2	chr16:79876296..79878521-chr16:79970090..79972829,2	K562	blood:
3	chr16:79875743..79877329-chr16:79901353..79903066,2	K562	blood:
4	chr16:79797845..79800017-chr16:79875232..79877671,2	K562	blood:
5	chr16:79870617..79872194-chr16:79875627..79877913,2	K562	blood:
6	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
7	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:
8	chr16:79869480..79871405-chr16:79876316..79879081,2	K562	blood:
9	chr16:79875829..79877990-chr16:79901353..79904058,2	K562	blood:

No data

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11639767	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11641047	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11644568	0.82[AMR][1000 genomes]
rs11644893	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11646016	1.00[EUR][1000 genomes]
rs11649677	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11649685	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16951485	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16951509	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16951514	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28401424	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28550306	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28566844	0.84[ASN][1000 genomes]
rs28678066	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28682553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28694329	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4290483	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4307960	0.83[CHB][hapmap];0.95[CHD][hapmap];0.83[ASN][1000 genomes]
rs4372703	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4410095	0.85[EUR][1000 genomes]
rs4465617	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7184396	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195432	0.89[CHB][hapmap]
rs74037860	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs74037863	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74037864	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921272	0.88[ASN][1000 genomes]
rs9921449	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9925226	0.87[ASN][1000 genomes]
rs9933396	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
2	chr16:79874000-79880600	Weak transcription	Right Atrium	heart
3	chr16:79876000-79882400	Weak transcription	Fetal Lung	lung
4	chr16:79876400-79880200	Flanking Active TSS	K562	blood
5	chr16:79876800-79879200	Enhancers	Fetal Stomach	stomach

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