Variant report

Variant	rs16951485
Chromosome Location	chr16:79874582-79874583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79873710..79876055-chr16:79879672..79882063,2	K562	blood:
2	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
3	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11639767	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11641047	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11644568	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11644893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11646016	1.00[EUR][1000 genomes]
rs11649677	0.89[EUR][1000 genomes]
rs11649685	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16951509	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16951514	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28401424	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28550306	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28566844	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28678066	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28682553	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28694329	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4290483	0.91[CHB][hapmap]
rs4307960	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4372703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4410095	0.85[EUR][1000 genomes]
rs7184396	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7203769	0.82[AMR][1000 genomes]
rs7206616	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs74037860	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74037863	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74037864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74039248	0.95[ASN][1000 genomes]
rs9921272	0.80[ASN][1000 genomes]
rs9921449	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9925226	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9933396	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
3	chr16:79872400-79874800	Weak transcription	K562	blood
4	chr16:79872600-79875000	Enhancers	Rectal Smooth Muscle	rectum
5	chr16:79872800-79874600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr16:79872800-79874600	Enhancers	Colon Smooth Muscle	Colon
7	chr16:79872800-79875400	Enhancers	Fetal Stomach	stomach
8	chr16:79873000-79874600	Enhancers	Ovary	ovary
9	chr16:79873000-79875000	Enhancers	Brain Germinal Matrix	brain
10	chr16:79873000-79875200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr16:79873600-79874600	Flanking Active TSS	Fetal Lung	lung
12	chr16:79874000-79875000	Active TSS	Fetal Brain Male	brain
13	chr16:79874000-79880600	Weak transcription	Right Atrium	heart

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